6APL | pdb_00006apl

Crystal Structure of human ST6GALNAC2 in complex with CMP

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	ATP-synt_Eps	e6aplA1	A: alpha bundles	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: ATP-synt_Eps	ECOD (develop294)
D	ATP-synt_Eps	e6aplD1	A: alpha bundles	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: ATP-synt_Eps	ECOD (develop294)
E	ATP-synt_Eps	e6aplE1	A: alpha bundles	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: ATP-synt_Eps	ECOD (develop294)
F	ATP-synt_Eps	e6aplF1	A: alpha bundles	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: ATP-synt_Eps	ECOD (develop294)
C	ATP-synt_Eps	e6aplC1	A: alpha bundles	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: ATP-synt_Eps	ECOD (develop294)
B	ATP-synt_Eps	e6aplB1	A: alpha bundles	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: ATP-synt_Eps	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF00777	Glycosyltransferase family 29 (sialyltransferase) (Glyco_transf_29)	Glycosyltransferase family 29 (sialyltransferase)	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	glycosyltransferase activity sialyltransferase activity transferase activity catalytic activity alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity	carbohydrate derivative biosynthetic process glycoprotein biosynthetic process carbohydrate derivative metabolic process primary metabolic process glycoprotein metabolic process macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process protein O-linked glycosylation protein O-linked glycosylation via N-acetyl-galactosamine viral gene expression carbohydrate derivative biosynthetic process glycoprotein biosynthetic process carbohydrate derivative metabolic process primary metabolic process glycoprotein metabolic process macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process protein O-linked glycosylation protein O-linked glycosylation via N-acetyl-galactosamine viral gene expression viral protein processing viral process protein sialylation macromolecule modification protein modification process sialylation	membrane-bounded organelle Golgi membrane intracellular anatomical structure Golgi apparatus membrane intracellular membrane-bounded organelle endomembrane system intracellular organelle bounding membrane of organelle cellular anatomical structure organelle cytoplasm organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR001675	Glycosyl transferase family 29	Family
A, B, C, D, E A, B, C, D, E, F	IPR038578	GT29-like superfamiliy	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR012163	Sialyltransferase	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F	Pharos: Q9UJ37	IgA glomerulonephritis atypical teratoid rhabdoid tumor glioblastoma large cell medulloblastoma lung carcinoma ovarian cancer cutaneous lupus erythematosus lung adenocarcinoma malignant ependymoma psoriasis diabetes mellitus interstitial cystitis lung cancer osteosarcoma tuberculosis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.