6AHU | pdb_00006ahu

Cryo-EM structure of human Ribonuclease P with mature tRNA


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
JPLATe6ahuJ1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: a+b domain in beta-lactamase/transpeptidase-like proteinsT: a+b domain in beta-lactamase/transpeptidase-like proteinsF: PLATECOD (v294.1)
IPLATe6ahuI1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: a+b domain in beta-lactamase/transpeptidase-like proteinsT: a+b domain in beta-lactamase/transpeptidase-like proteinsF: PLATECOD (v294.1)
HPLATe6ahuH1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: a+b domain in beta-lactamase/transpeptidase-like proteinsT: a+b domain in beta-lactamase/transpeptidase-like proteinsF: PLATECOD (v294.1)
GPLATe6ahuG1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: a+b domain in beta-lactamase/transpeptidase-like proteinsT: a+b domain in beta-lactamase/transpeptidase-like proteinsF: PLATECOD (v294.1)
FPLATe6ahuF1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: a+b domain in beta-lactamase/transpeptidase-like proteinsT: a+b domain in beta-lactamase/transpeptidase-like proteinsF: PLATECOD (v294.1)
DPLATe6ahuD1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: a+b domain in beta-lactamase/transpeptidase-like proteinsT: a+b domain in beta-lactamase/transpeptidase-like proteinsF: PLATECOD (v294.1)
LNADHdhe6ahuL1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Sodium/proton antiporter subunits-likeT: NADH-quinone oxidoreductase subunit 8 (Nqo8)-relatedF: NADHdhECOD (v294.1)
KPLATe6ahuK1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: a+b domain in beta-lactamase/transpeptidase-like proteinsT: a+b domain in beta-lactamase/transpeptidase-like proteinsF: PLATECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
I3.20.20.140 Alpha Beta Alpha-Beta Barrel TIM Barrel Metal-dependent hydrolasesCATH (utative)
H3.30.70.3250 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Ribonuclease P, Pop5 subunitCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I, J
PF01876RNase P subunit p30 (RNase_P_p30)RNase P subunit p30This protein is part of the RNase P complex that is involved in tRNA maturation [1]. Domain
PF01900Rpp14/Pop5 family (RNase_P_Rpp14)Rpp14/Pop5 family- Family
PF12328Rpp20 subunit of nuclear RNase MRP and P (Rpp20)Rpp20 subunit of nuclear RNase MRP and P- Family
PF01918Alba (Alba)AlbaAlba is a novel chromosomal protein that coats archaeal DNA without compacting it. Domain
PF01900Rpp14/Pop5 family (RNase_P_Rpp14)Rpp14/Pop5 family- Family
PF01868Ribonuclease P/MRP, subunit p29 (RNase_P-MRP_p29)Ribonuclease P/MRP, subunit p29- Family
PF22770POP1 C-terminal domain (POP1_C)POP1 C-terminal domainThis entry represents the C-terminal domain of human Ribonuclease P/MRP protein subunit POP1 and similar eukaryotic sequences. POP1 is a component of Ribonuclease P that cleaves the 5' leader from precursor tRNAs. The C-terminal domain of POP1 intera ...This entry represents the C-terminal domain of human Ribonuclease P/MRP protein subunit POP1 and similar eukaryotic sequences. POP1 is a component of Ribonuclease P that cleaves the 5' leader from precursor tRNAs. The C-terminal domain of POP1 interacts with H1 RNA and has a stabilizing role. This domain adopts a beta-barrel structure that is structurally very similar to the C-terminal beta-barrel domains of eIF2 gamma, EF-Tu and tRNA thiouridylase MnmA [1].
Domain
PF08170POPLD (NUC188) domain (POPLD)POPLD (NUC188) domainThis domain is found in POP1-like nucleolar proteins [1]. Domain
PF06978Ribonucleases P/MRP protein subunit POP1, N-terminal (POP1_N)Ribonucleases P/MRP protein subunit POP1, N-terminalThis entry represents a conserved region approximately 150 residues long located towards the N-terminus of the POP1 subunit that is common to both the RNase MRP and RNase P ribonucleoproteins (EC:3.1.26.5) [1]. These RNA-containing enzymes generate m ...This entry represents a conserved region approximately 150 residues long located towards the N-terminus of the POP1 subunit that is common to both the RNase MRP and RNase P ribonucleoproteins (EC:3.1.26.5) [1]. These RNA-containing enzymes generate mature tRNA molecules by cleaving their 5' ends. This is a short N-terminal domain consisting of a small helical core and a long alpha-helix [2], which is enriched with positively charged residues involved in pre-tRNA substrate recognition [2].
Domain
PF08584Ribonuclease P 40kDa (Rpp40) subunit (Ribonuc_P_40)Ribonuclease P 40kDa (Rpp40) subunit- Family
PF04032RNAse P Rpr2/Rpp21/SNM1 subunit domain (Rpr2)RNAse P Rpr2/Rpp21/SNM1 subunit domain- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I, J
Ribonuclease P protein subunit p30
Ribonuclease P protein subunit p14
Ribonuclease P protein subunit p20
Ribonuclease P protein subunit p25
Ribonuclease P/MRP protein subunit POP5
Ribonuclease P protein subunit p29
Ribonuclease P protein subunit p38
Ribonucleases P/MRP protein subunit POP1
M [auth T]tRNA---
Ribonuclease P protein subunit p40
Ribonuclease P protein subunit p21
H1 RNA---

InterPro: Protein Family Classification InterPro Database Homepage

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
I, J
PharosP78346
PharosO95059
PharosO75817
PharosQ9BUL9
PharosQ969H6
PharosO95707
PharosP78345
PharosQ99575
PharosO75818
PharosQ9H633