Crystal structure of transcription factor from Listeria monocytogenes
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B [auth A] | d6abqa1 | All alpha proteins | DNA/RNA-binding 3-helical bundle | 'Winged helix' DNA-binding domain | automated matches | automated matches | (Listeria monocytogenes ) [TaxId: 1639 ], | SCOPe (2.08) |
| B [auth A] | d6abqa2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Listeria monocytogenes ) [TaxId: 1639 ], | SCOPe (2.08) |
| A [auth B] | d6abqb_ | All alpha proteins | DNA/RNA-binding 3-helical bundle | 'Winged helix' DNA-binding domain | automated matches | automated matches | (Listeria monocytogenes ) [TaxId: 1639 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B [auth A] | PadR | e6abqA1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PadR | ECOD (1.6) |
| A [auth B] | PadR | e6abqB1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PadR | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B [auth A] | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (utative) |
| A [auth B] | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| A [auth B], B [auth A] | PF03551 | Transcriptional regulator PadR-like family (PadR) | Transcriptional regulator PadR-like family | Members of this family are transcriptional regulators that appear to be related to the Pfam:PF01047 family. This family includes PadR Swiss:Q9EXE6 a protein that is involved in negative regulation of phenolic acid metabolism. | Domain |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| A [auth B], B [auth A] | IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily |
| A [auth B], B [auth A] | IPR005149 | Transcription regulator PadR, N-terminal | Domain |
| A [auth B], B [auth A] | IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily |
| A [auth B], B [auth A] | IPR052509 | Metal-responsive DNA-binding regulator | Family |
