5ZAP | pdb_00005zap

Atomic structure of the herpes simplex virus type 2 B-capsid

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
FA [auth f], GA [auth g], HA [auth h], IA [auth i], JA [auth j], FA [auth f], GA [auth g], HA [auth h], IA [auth i], JA [auth j], KA [auth k], LA [auth l], MA [auth m], NA [auth n], OA [auth o], PA [auth p], QA [auth q], RA [auth r], SA [auth s], TA [auth t]	Small capsomere-interacting protein	-	viral process	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle
BA [auth b], EA [auth e], S, V, Y	Triplex capsid protein 1	DNA binding binding nucleic acid binding	virion assembly viral process viral capsid assembly viral life cycle	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle
AA [auth a], CA [auth c], DA [auth d], Q, R, AA [auth a], CA [auth c], DA [auth d], Q, R, T, U, W, X, Z	Triplex capsid protein 2	structural molecule activity	-	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle
A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H, I, J, K, L, M, N, O, P	Major capsid protein	structural molecule activity	-	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle viral capsid icosahedral viral capsid virion component T=16 icosahedral viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
FA [auth f], GA [auth g], HA [auth h], IA [auth i], JA [auth j], FA [auth f], GA [auth g], HA [auth h], IA [auth i], JA [auth j], KA [auth k], LA [auth l], MA [auth m], NA [auth n], OA [auth o], PA [auth p], QA [auth q], RA [auth r], SA [auth s], TA [auth t]	IPR007584	Herpesvirus UL35	Family
BA [auth b], EA [auth e], S, V, Y	IPR004999	Herpesvirus capsid shell protein 1	Family
AA [auth a], CA [auth c], DA [auth d], Q, R, AA [auth a], CA [auth c], DA [auth d], Q, R, T, U, W, X, Z	IPR002690	Herpesvirus capsid protein 2	Family
A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H, I, J, K, L, M, N, O, P	IPR000912	Herpesvirus major capsid protein	Family
A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H, I, J, K, L, M, N, O, P	IPR023233	Herpesvirus major capsid protein, upper domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.