5ZAP | pdb_00005zap

Atomic structure of the herpes simplex virus type 2 B-capsid

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H, I, J, K, L, M, N, O, P	PF01802	Herpesvirus VP23 like capsid protein (Herpes_V23)	Herpesvirus VP23 like capsid protein	-	Family
A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H, I, J, K, L, M, N, O, P	PF04496	Herpesvirus UL35 family (Herpes_UL35)	Herpesvirus UL35 family	-	Family
A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H, I, J, K, L, M, N, O, P	PF03122	Herpes virus major capsid protein (Herpes_MCP)	Herpes virus major capsid protein	-	Family
A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H, I, J, K, L, M, N, O, P	PF03327	Herpesvirus capsid shell protein VP19C (Herpes_VP19C)	Herpesvirus capsid shell protein VP19C	-	Family
AA [auth a], CA [auth c], DA [auth d], Q, R, AA [auth a], CA [auth c], DA [auth d], Q, R, T, U, W, X, Z	PF01802	Herpesvirus VP23 like capsid protein (Herpes_V23)	Herpesvirus VP23 like capsid protein	-	Family
AA [auth a], CA [auth c], DA [auth d], Q, R, AA [auth a], CA [auth c], DA [auth d], Q, R, T, U, W, X, Z	PF04496	Herpesvirus UL35 family (Herpes_UL35)	Herpesvirus UL35 family	-	Family
BA [auth b], EA [auth e], S, V, Y	PF04496	Herpesvirus UL35 family (Herpes_UL35)	Herpesvirus UL35 family	-	Family
BA [auth b], EA [auth e], S, V, Y	PF03327	Herpesvirus capsid shell protein VP19C (Herpes_VP19C)	Herpesvirus capsid shell protein VP19C	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H, I, J, K, L, M, N, O, P	Major capsid protein	structural molecule activity	-	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle viral capsid icosahedral viral capsid virion component T=16 icosahedral viral capsid
AA [auth a], CA [auth c], DA [auth d], Q, R, AA [auth a], CA [auth c], DA [auth d], Q, R, T, U, W, X, Z	Triplex capsid protein 2	structural molecule activity	-	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle
BA [auth b], EA [auth e], S, V, Y	Triplex capsid protein 1	DNA binding binding nucleic acid binding	virion assembly viral process viral capsid assembly viral life cycle	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle
FA [auth f], GA [auth g], HA [auth h], IA [auth i], JA [auth j], FA [auth f], GA [auth g], HA [auth h], IA [auth i], JA [auth j], KA [auth k], LA [auth l], MA [auth m], NA [auth n], OA [auth o], PA [auth p], QA [auth q], RA [auth r], SA [auth s], TA [auth t]	Small capsomere-interacting protein	-	viral process	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H, I, J, K, L, M, N, O, P	IPR000912	Herpesvirus major capsid protein	Family
A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H, I, J, K, L, M, N, O, P	IPR023233	Herpesvirus major capsid protein, upper domain superfamily	Homologous Superfamily
AA [auth a], CA [auth c], DA [auth d], Q, R, AA [auth a], CA [auth c], DA [auth d], Q, R, T, U, W, X, Z	IPR002690	Herpesvirus capsid protein 2	Family
BA [auth b], EA [auth e], S, V, Y	IPR004999	Herpesvirus capsid shell protein 1	Family
FA [auth f], GA [auth g], HA [auth h], IA [auth i], JA [auth j], FA [auth f], GA [auth g], HA [auth h], IA [auth i], JA [auth j], KA [auth k], LA [auth l], MA [auth m], NA [auth n], OA [auth o], PA [auth p], QA [auth q], RA [auth r], SA [auth s], TA [auth t]	IPR007584	Herpesvirus UL35	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.