Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad5yoya1 All beta proteins TNF-like TNF-like TNF-like Tumor necrosis factor (TNF) Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ad5yoya2 Artifacts Tags Tags Tags C-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Cd5yoyc1 All beta proteins TNF-like TNF-like TNF-like Tumor necrosis factor (TNF) Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Cd5yoyc2 Artifacts Tags Tags Tags C-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ld5yoyl1 All beta proteins TNF-like TNF-like TNF-like Tumor necrosis factor (TNF) Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ld5yoyl2 Artifacts Tags Tags Tags C-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Bd5yoyb1 All beta proteins TNF-like TNF-like TNF-like Tumor necrosis factor (TNF) Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Bd5yoyb2 Artifacts Tags Tags Tags C-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Jd5yoyj1 All beta proteins TNF-like TNF-like TNF-like Tumor necrosis factor (TNF) Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Jd5yoyj2 Artifacts Tags Tags Tags C-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Kd5yoyk1 All beta proteins TNF-like TNF-like TNF-like Tumor necrosis factor (TNF) Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Kd5yoyk2 Artifacts Tags Tags Tags C-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Dd5yoyd_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Od5yoyo_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ed5yoye_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Fd5yoyf_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Md5yoym_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Nd5yoyn_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Gd5yoyg_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Hd5yoyh_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Id5yoyi_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Rd5yoyr_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Pd5yoyp_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Qd5yoyq_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyTNF-like8041219 3000061 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyTNF-like8041219 3000061 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyTNF-like8041219 3000061 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyTNF-like8041219 3000061 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyTNF-like8041219 3000061 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyTNF-like8041219 3000061 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00229e5yoyA1 A: beta sandwichesX: jelly-rollH: TNF-like (From Topology)T: TNF-likeF: PF00229ECOD (1.6)
CPF00229e5yoyC1 A: beta sandwichesX: jelly-rollH: TNF-like (From Topology)T: TNF-likeF: PF00229ECOD (1.6)
LPF00229e5yoyL1 A: beta sandwichesX: jelly-rollH: TNF-like (From Topology)T: TNF-likeF: PF00229ECOD (1.6)
BPF00229e5yoyB1 A: beta sandwichesX: jelly-rollH: TNF-like (From Topology)T: TNF-likeF: PF00229ECOD (1.6)
JPF00229e5yoyJ1 A: beta sandwichesX: jelly-rollH: TNF-like (From Topology)T: TNF-likeF: PF00229ECOD (1.6)
KPF00229e5yoyK1 A: beta sandwichesX: jelly-rollH: TNF-like (From Topology)T: TNF-likeF: PF00229ECOD (1.6)
DPF07686e5yoyD1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
OPF07686e5yoyO1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
EPF07686e5yoyE1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
FPF07686e5yoyF1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
MPF07686e5yoyM1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
NPF07686e5yoyN1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
GPF07686e5yoyG1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
HPF07686e5yoyH1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
IPF07686e5yoyI1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
RPF07686e5yoyR1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
PPF07686e5yoyP1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
QPF07686e5yoyQ1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.60.120.40 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
C2.60.120.40 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
L2.60.120.40 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
B2.60.120.40 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
J2.60.120.40 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
K2.60.120.40 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
D2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
O2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
E2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
F2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
M2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
N2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
A, B, C, J, K
Tumor necrosis factor TNF Homo sapiens (human) TNF*01 R-LIKE-DOMAIN TNF (Pr77-233) RPI TNF IMGT (202416-0)
D, E, F, M, N
Golimumab V-KAPPA Homo sapiens (human) IGKV3-11*01, IGKJ3*01 V-DOMAIN V-KAPPA IG VH-V-KAPPA IMGT (202416-0)
G, H, I, P, Q
Golimumab VH Homo sapiens (human) IGHV3-30*01, IGHV3-30*04, IGHV3-30*07, IGHV3-30*11, IGHV3-30*14, IGHV3-30*16, IGHV3-30*17, IGHV3-30-3*01, IGHV3-30-3*03, IGHJ6*01 V-DOMAIN VH IG VH-V-KAPPA IMGT (202416-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
D, E, F, M, N
Light ChainIGKV3 Kappatumor necrosis factorSAbDab (2024-04-26)
G, H, I, P, Q
Heavy ChainIGHV3 -tumor necrosis factorSAbDab (2024-04-26)

Thera-SAbDab Antibody Annotation Thera-SAbDab Database Homepage

ChainNameTargetProvenance Source
D, E, F, M, N
Golimumab TNF/TNFATherapeutic SAbDab (2024-04-26)
G, H, I, P, Q
Golimumab TNF/TNFATherapeutic SAbDab (2024-04-26)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, J, K
PF00229TNF(Tumour Necrosis Factor) family (TNF)TNF(Tumour Necrosis Factor) family- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, J, K
Tumor necrosis factor
D, E, F, M, N
Golimumab light chain variable region---
G, H, I, P, Q
Golimumab heavy chain variable region---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, J, K
IPR008983Tumour necrosis factor-like domain superfamilyHomologous Superfamily
A, B, C, J, K
IPR006053Tumour necrosis factorFamily
A, B, C, J, K
IPR002959Tumour necrosis factor alphaFamily
A, B, C, J, K
IPR021184Tumour necrosis factor, conserved siteConserved Site
A, B, C, J, K
IPR006052Tumour necrosis factor domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A, B, C, J, K
PharosP01375