5XS0 | pdb_00005xs0

Structure of a ssDNA bound to the outer DNA binding site of RAD52

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
V	SCOP2B Superfamily	dsRNA-binding domain-like	8042783	3000985	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	dsRNA-binding domain-like	8042783	3000985	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	dsRNA-binding domain-like	8042783	3000985	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	dsRNA-binding domain-like	8042783	3000985	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	dsRNA-binding domain-like	8042783	3000985	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	dsRNA-binding domain-like	8042783	3000985	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	dsRNA-binding domain-like	8042783	3000985	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	dsRNA-binding domain-like	8042783	3000985	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	dsRNA-binding domain-like	8042783	3000985	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	dsRNA-binding domain-like	8042783	3000985	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	dsRNA-binding domain-like	8042783	3000985	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	dsRNA-binding domain-like	8042783	3000985	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	dsRNA-binding domain-like	8042783	3000985	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	dsRNA-binding domain-like	8042783	3000985	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	dsRNA-binding domain-like	8042783	3000985	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	dsRNA-binding domain-like	8042783	3000985	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	dsRNA-binding domain-like	8042783	3000985	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	dsRNA-binding domain-like	8042783	3000985	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	dsRNA-binding domain-like	8042783	3000985	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	dsRNA-binding domain-like	8042783	3000985	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	dsRNA-binding domain-like	8042783	3000985	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	dsRNA-binding domain-like	8042783	3000985	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
V	TNF	e5xs0V1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: TNF	ECOD (v294.1)
U	TNF	e5xs0U1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: TNF	ECOD (v294.1)
T	TNF	e5xs0T1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: TNF	ECOD (v294.1)
S	TNF	e5xs0S1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: TNF	ECOD (v294.1)
R	TNF	e5xs0R1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: TNF	ECOD (v294.1)
Q	TNF	e5xs0Q1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: TNF	ECOD (v294.1)
P	TNF	e5xs0P1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: TNF	ECOD (v294.1)
O	TNF	e5xs0O1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: TNF	ECOD (v294.1)
N	TNF	e5xs0N1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: TNF	ECOD (v294.1)
M	TNF	e5xs0M1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: TNF	ECOD (v294.1)
L	TNF	e5xs0L1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: TNF	ECOD (v294.1)
K	TNF	e5xs0K1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: TNF	ECOD (v294.1)
J	TNF	e5xs0J1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: TNF	ECOD (v294.1)
I	TNF	e5xs0I1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: TNF	ECOD (v294.1)
H	TNF	e5xs0H1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: TNF	ECOD (v294.1)
G	TNF	e5xs0G1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: TNF	ECOD (v294.1)
F	TNF	e5xs0F1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: TNF	ECOD (v294.1)
E	TNF	e5xs0E1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: TNF	ECOD (v294.1)
D	TNF	e5xs0D1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: TNF	ECOD (v294.1)
C	TNF	e5xs0C1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: TNF	ECOD (v294.1)
B	TNF	e5xs0B1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: TNF	ECOD (v294.1)
A	TNF	e5xs0A1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: TNF	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
V	3.30.390.80	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
U	3.30.390.80	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
T	3.30.390.80	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
S	3.30.390.80	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
R	3.30.390.80	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
Q	3.30.390.80	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
P	3.30.390.80	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
O	3.30.390.80	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
N	3.30.390.80	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
M	3.30.390.80	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
L	3.30.390.80	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
K	3.30.390.80	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
J	3.30.390.80	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
I	3.30.390.80	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
H	3.30.390.80	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
G	3.30.390.80	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
F	3.30.390.80	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
E	3.30.390.80	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
D	3.30.390.80	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
C	3.30.390.80	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
B	3.30.390.80	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
A	3.30.390.80	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V	PF04098	Rad52/22 family double-strand break repair protein (Rad52_Rad22)	Rad52/22 family double-strand break repair protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
W	ssDNA (5'-D(CPCPCPCPCPC)-3')	-	-	-
X	ssDNA (5'-D(CPCPCPCPCPCPCPC)-3')	-	-	-
Y	ssDNA (5'-D(CPCPCPCPCPCPCPCPCPC)-3')	-	-	-
Z	ssDNA (5'-D(CPCPCPCPCPCPCPCP*C)-3')	-	-	-
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V	DNA repair protein RAD52 homolog	DNA binding binding nucleic acid binding identical protein binding protein binding single-stranded DNA binding	nucleobase-containing compound metabolic process DNA recombination mitotic recombination metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process cellular response to stimulus double-strand break repair response to stimulus double-strand break repair via single-strand annealing cellular response to stress nucleobase-containing compound metabolic process DNA recombination mitotic recombination metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process cellular response to stimulus double-strand break repair response to stimulus double-strand break repair via single-strand annealing cellular response to stress DNA damage response response to stress DNA repair recombinational repair double-strand break repair via homologous recombination regulation of cellular process regulation of cellular response to stress regulation of primary metabolic process nucleotide-excision repair regulation of response to stress regulation of nucleobase-containing compound metabolic process regulation of biological process biological regulation regulation of macromolecule metabolic process regulation of DNA repair regulation of response to stimulus regulation of nucleotide-excision repair regulation of metabolic process regulation of DNA metabolic process DNA double-strand break processing DNA double-strand break processing involved in repair via single-strand annealing cellular component organization cellular component biogenesis protein-DNA complex organization DNA recombinase assembly cellular component assembly protein-containing complex assembly DNA repair complex assembly cellular component organization or biogenesis protein-containing complex organization protein-DNA complex assembly double-strand break repair via synthesis-dependent strand annealing response to oxidative stress cellular response to chemical stimulus response to chemical cellular response to oxidative stress cellular response to chemical stress	protein-containing complex protein-DNA complex membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V	IPR042525	DNA repair protein Rad52/59/22 superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V	IPR007232	DNA repair protein Rad52/59/22	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V	IPR004585	DNA recombination/repair protein Rad52	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V	IPR041247	Rad52 family	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V	Pharos: P43351	squamous cell carcinoma atopic eczema Lung Neoplasms osteosarcoma lung benign neoplasm malignant mesothelioma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia squamous cell lung carcinoma lung carcinoma psoriasis