Structure of tetrameric HIV-1 Strand Transfer Complex Intasome
External Resource: Annotation
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | IN_DBD_C | e5u1cA1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
| A | Integrase_Zn | e5u1cA3 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
| A | rve | e5u1cA2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
| G [auth D] | IN_DBD_C | e5u1cD2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
| G [auth D] | rve | e5u1cD1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
| F [auth C] | IN_DBD_C | e5u1cC1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
| F [auth C] | Integrase_Zn | e5u1cC3 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
| F [auth C] | rve | e5u1cC2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
| B | IN_DBD_C | e5u1cB2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
| B | rve | e5u1cB1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| E [auth F], J | DNA (37-MER) | - | - | - |
| D [auth E], I | DNA (23-MER) | - | - | - |
| C [auth G], H | DNA (11-MER) | - | - | - |
| A, B, F [auth C], G [auth D] | HIV-1 Integrase, Sso7d chimera | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| A, B, F [auth C], G [auth D] | IPR016197 | Chromo-like domain superfamily | Homologous Superfamily |
| A, B, F [auth C], G [auth D] | IPR003212 | DNA-binding protein 7a-e | Family |
