5TRE | pdb_00005tre

Zinc and the Iron Donor Frataxin Regulate Oligomerization of the Scaffold Protein to Form New Fe-S Cluster Assembly Centers


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
Z [auth M]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
X [auth L]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
VA [auth X]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
V [auth K]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
TA [auth W]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
T [auth J]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
RA [auth V]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
R [auth I]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
PA [auth U]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
P [auth H]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
NA [auth T]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
N [auth G]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
LA [auth S]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
L [auth F]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
JA [auth R]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
J [auth E]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
HA [auth Q]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
H [auth D]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
FA [auth P]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
F [auth C]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
DA [auth O]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
D [auth B]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
BA [auth N]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
B [auth A]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
Y [auth m]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
W [auth l]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
UA [auth x]SCOP2 FamilyNifU/IscU domain 8099085 4001402 SCOP2 (2022-06-29)
UA [auth x]SCOP2 SuperfamilySufE/NifU 8099086 3000436 SCOP2 (2022-06-29)
U [auth k]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
SA [auth w]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
S [auth j]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
QA [auth v]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
Q [auth i]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
OA [auth u]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
O [auth h]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
MA [auth t]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
M [auth g]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
KA [auth s]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
K [auth f]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
IA [auth r]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
I [auth e]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
GA [auth q]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
G [auth d]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
EA [auth p]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
E [auth c]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
CA [auth o]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
C [auth b]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
AA [auth n]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
A [auth a]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Z [auth M]LpxCe5treM1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
X [auth L]LpxCe5treL1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
VA [auth X]LpxCe5treX1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
V [auth K]LpxCe5treK1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
TA [auth W]LpxCe5treW1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
T [auth J]LpxCe5treJ1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
RA [auth V]LpxCe5treV1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
R [auth I]LpxCe5treI1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
PA [auth U]LpxCe5treU1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
P [auth H]LpxCe5treH1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
NA [auth T]LpxCe5treT1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
N [auth G]LpxCe5treG1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
LA [auth S]LpxCe5treS1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
L [auth F]LpxCe5treF1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
JA [auth R]LpxCe5treR1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
J [auth E]LpxCe5treE1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
HA [auth Q]LpxCe5treQ1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
H [auth D]LpxCe5treD1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
FA [auth P]LpxCe5treP1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
F [auth C]LpxCe5treC1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
DA [auth O]LpxCe5treO1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
D [auth B]LpxCe5treB1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
BA [auth N]LpxCe5treN1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
B [auth A]LpxCe5treA1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
Y [auth m]LpxCe5trem1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
W [auth l]LpxCe5trel1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
UA [auth x]LpxCe5trex1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
U [auth k]LpxCe5trek1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
SA [auth w]LpxCe5trew1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
S [auth j]LpxCe5trej1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
QA [auth v]LpxCe5trev1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
Q [auth i]LpxCe5trei1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
OA [auth u]LpxCe5treu1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
O [auth h]LpxCe5treh1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
MA [auth t]LpxCe5tret1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
M [auth g]LpxCe5treg1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
KA [auth s]LpxCe5tres1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
K [auth f]LpxCe5tref1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
IA [auth r]LpxCe5trer1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
I [auth e]LpxCe5tree1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
GA [auth q]LpxCe5treq1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
G [auth d]LpxCe5tred1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
EA [auth p]LpxCe5trep1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
E [auth c]LpxCe5trec1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
CA [auth o]LpxCe5treo1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
C [auth b]LpxCe5treb1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
AA [auth n]LpxCe5tren1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)
A [auth a]LpxCe5trea1 A: a/b three-layered sandwichesX: Beta domain of coronavirus spike glycoproteinH: HAMP domainT: Polymerase basic protein 2 cap-binding domainF: LpxCECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF01491Frataxin-like domain (Frataxin_Cyay)Frataxin-like domainThis family contains proteins that have a domain related to the globular C-terminus of Frataxin the protein that is mutated in Friedreich's ataxia. This domain is found in a family of bacterial proteins. The function of this domain is currently unkno ...This family contains proteins that have a domain related to the globular C-terminus of Frataxin the protein that is mutated in Friedreich's ataxia. This domain is found in a family of bacterial proteins. The function of this domain is currently unknown. It has been suggested that this family is involved in iron transport.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Frataxin homolog, mitochondrial
Iron sulfur cluster assembly protein 1, mitochondrial

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR020895Frataxin conserved siteConserved Site
IPR017789FrataxinFamily
IPR036524Frataxin/CyaY superfamilyHomologous Superfamily
IPR002908Frataxin/CyaYFamily
IPR011339Iron-sulfur cluster assembly scaffold protein IscUFamily
IPR002871NIF system FeS cluster assembly, NifU, N-terminalDomain