5TRE | pdb_00005tre

Zinc and the Iron Donor Frataxin Regulate Oligomerization of the Scaffold Protein to Form New Fe-S Cluster Assembly Centers


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth a]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
AA [auth n]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
CA [auth o]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
E [auth c]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
EA [auth p]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
G [auth d]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
GA [auth q]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
I [auth e]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
IA [auth r]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
K [auth f]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
KA [auth s]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
M [auth g]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
MA [auth t]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
O [auth h]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
OA [auth u]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
Q [auth i]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
QA [auth v]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
S [auth j]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
SA [auth w]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
U [auth k]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
W [auth l]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
Y [auth m]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
UA [auth x]SCOP2 FamilyNifU/IscU domain 8099085 4001402 SCOP2 (2022-06-29)
UA [auth x]SCOP2 SuperfamilySufE/NifU 8099086 3000436 SCOP2 (2022-06-29)
C [auth b]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
B [auth A]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
BA [auth N]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
D [auth B]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
F [auth C]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
FA [auth P]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
H [auth D]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
HA [auth Q]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
J [auth E]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
JA [auth R]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
L [auth F]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
LA [auth S]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
N [auth G]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
NA [auth T]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
P [auth H]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
PA [auth U]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
R [auth I]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
RA [auth V]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
T [auth J]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
TA [auth W]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
VA [auth X]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
X [auth L]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
Z [auth M]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
V [auth K]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
DA [auth O]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth a]NifU_Ne5trea1 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: SufE/NifU (From Topology)T: SufE/NifUF: NifU_NECOD (1.6)
AA [auth n]NifU_Ne5tren1 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: SufE/NifU (From Topology)T: SufE/NifUF: NifU_NECOD (1.6)
CA [auth o]NifU_Ne5treo1 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: SufE/NifU (From Topology)T: SufE/NifUF: NifU_NECOD (1.6)
E [auth c]NifU_Ne5trec1 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: SufE/NifU (From Topology)T: SufE/NifUF: NifU_NECOD (1.6)
EA [auth p]NifU_Ne5trep1 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: SufE/NifU (From Topology)T: SufE/NifUF: NifU_NECOD (1.6)
G [auth d]NifU_Ne5tred1 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: SufE/NifU (From Topology)T: SufE/NifUF: NifU_NECOD (1.6)
GA [auth q]NifU_Ne5treq1 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: SufE/NifU (From Topology)T: SufE/NifUF: NifU_NECOD (1.6)
I [auth e]NifU_Ne5tree1 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: SufE/NifU (From Topology)T: SufE/NifUF: NifU_NECOD (1.6)
IA [auth r]NifU_Ne5trer1 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: SufE/NifU (From Topology)T: SufE/NifUF: NifU_NECOD (1.6)
K [auth f]NifU_Ne5tref1 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: SufE/NifU (From Topology)T: SufE/NifUF: NifU_NECOD (1.6)
KA [auth s]NifU_Ne5tres1 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: SufE/NifU (From Topology)T: SufE/NifUF: NifU_NECOD (1.6)
M [auth g]NifU_Ne5treg1 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: SufE/NifU (From Topology)T: SufE/NifUF: NifU_NECOD (1.6)
MA [auth t]NifU_Ne5tret1 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: SufE/NifU (From Topology)T: SufE/NifUF: NifU_NECOD (1.6)
O [auth h]NifU_Ne5treh1 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: SufE/NifU (From Topology)T: SufE/NifUF: NifU_NECOD (1.6)
OA [auth u]NifU_Ne5treu1 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: SufE/NifU (From Topology)T: SufE/NifUF: NifU_NECOD (1.6)
Q [auth i]NifU_Ne5trei1 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: SufE/NifU (From Topology)T: SufE/NifUF: NifU_NECOD (1.6)
QA [auth v]NifU_Ne5trev1 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: SufE/NifU (From Topology)T: SufE/NifUF: NifU_NECOD (1.6)
S [auth j]NifU_Ne5trej1 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: SufE/NifU (From Topology)T: SufE/NifUF: NifU_NECOD (1.6)
SA [auth w]NifU_Ne5trew1 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: SufE/NifU (From Topology)T: SufE/NifUF: NifU_NECOD (1.6)
U [auth k]NifU_Ne5trek1 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: SufE/NifU (From Topology)T: SufE/NifUF: NifU_NECOD (1.6)
W [auth l]NifU_Ne5trel1 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: SufE/NifU (From Topology)T: SufE/NifUF: NifU_NECOD (1.6)
Y [auth m]NifU_Ne5trem1 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: SufE/NifU (From Topology)T: SufE/NifUF: NifU_NECOD (1.6)
UA [auth x]NifU_Ne5trex1 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: SufE/NifU (From Topology)T: SufE/NifUF: NifU_NECOD (1.6)
C [auth b]NifU_Ne5treb1 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: SufE/NifU (From Topology)T: SufE/NifUF: NifU_NECOD (1.6)
B [auth A]Frataxin_Cyaye5treA1 A: a+b two layersX: Type III secretory system chaperone-likeH: Frataxin-like (From Topology)T: Frataxin-likeF: Frataxin_CyayECOD (1.6)
BA [auth N]Frataxin_Cyaye5treN1 A: a+b two layersX: Type III secretory system chaperone-likeH: Frataxin-like (From Topology)T: Frataxin-likeF: Frataxin_CyayECOD (1.6)
D [auth B]Frataxin_Cyaye5treB1 A: a+b two layersX: Type III secretory system chaperone-likeH: Frataxin-like (From Topology)T: Frataxin-likeF: Frataxin_CyayECOD (1.6)
F [auth C]Frataxin_Cyaye5treC1 A: a+b two layersX: Type III secretory system chaperone-likeH: Frataxin-like (From Topology)T: Frataxin-likeF: Frataxin_CyayECOD (1.6)
FA [auth P]Frataxin_Cyaye5treP1 A: a+b two layersX: Type III secretory system chaperone-likeH: Frataxin-like (From Topology)T: Frataxin-likeF: Frataxin_CyayECOD (1.6)
H [auth D]Frataxin_Cyaye5treD1 A: a+b two layersX: Type III secretory system chaperone-likeH: Frataxin-like (From Topology)T: Frataxin-likeF: Frataxin_CyayECOD (1.6)
HA [auth Q]Frataxin_Cyaye5treQ1 A: a+b two layersX: Type III secretory system chaperone-likeH: Frataxin-like (From Topology)T: Frataxin-likeF: Frataxin_CyayECOD (1.6)
J [auth E]Frataxin_Cyaye5treE1 A: a+b two layersX: Type III secretory system chaperone-likeH: Frataxin-like (From Topology)T: Frataxin-likeF: Frataxin_CyayECOD (1.6)
JA [auth R]Frataxin_Cyaye5treR1 A: a+b two layersX: Type III secretory system chaperone-likeH: Frataxin-like (From Topology)T: Frataxin-likeF: Frataxin_CyayECOD (1.6)
L [auth F]Frataxin_Cyaye5treF1 A: a+b two layersX: Type III secretory system chaperone-likeH: Frataxin-like (From Topology)T: Frataxin-likeF: Frataxin_CyayECOD (1.6)
LA [auth S]Frataxin_Cyaye5treS1 A: a+b two layersX: Type III secretory system chaperone-likeH: Frataxin-like (From Topology)T: Frataxin-likeF: Frataxin_CyayECOD (1.6)
N [auth G]Frataxin_Cyaye5treG1 A: a+b two layersX: Type III secretory system chaperone-likeH: Frataxin-like (From Topology)T: Frataxin-likeF: Frataxin_CyayECOD (1.6)
NA [auth T]Frataxin_Cyaye5treT1 A: a+b two layersX: Type III secretory system chaperone-likeH: Frataxin-like (From Topology)T: Frataxin-likeF: Frataxin_CyayECOD (1.6)
P [auth H]Frataxin_Cyaye5treH1 A: a+b two layersX: Type III secretory system chaperone-likeH: Frataxin-like (From Topology)T: Frataxin-likeF: Frataxin_CyayECOD (1.6)
PA [auth U]Frataxin_Cyaye5treU1 A: a+b two layersX: Type III secretory system chaperone-likeH: Frataxin-like (From Topology)T: Frataxin-likeF: Frataxin_CyayECOD (1.6)
R [auth I]Frataxin_Cyaye5treI1 A: a+b two layersX: Type III secretory system chaperone-likeH: Frataxin-like (From Topology)T: Frataxin-likeF: Frataxin_CyayECOD (1.6)
RA [auth V]Frataxin_Cyaye5treV1 A: a+b two layersX: Type III secretory system chaperone-likeH: Frataxin-like (From Topology)T: Frataxin-likeF: Frataxin_CyayECOD (1.6)
T [auth J]Frataxin_Cyaye5treJ1 A: a+b two layersX: Type III secretory system chaperone-likeH: Frataxin-like (From Topology)T: Frataxin-likeF: Frataxin_CyayECOD (1.6)
TA [auth W]Frataxin_Cyaye5treW1 A: a+b two layersX: Type III secretory system chaperone-likeH: Frataxin-like (From Topology)T: Frataxin-likeF: Frataxin_CyayECOD (1.6)
VA [auth X]Frataxin_Cyaye5treX1 A: a+b two layersX: Type III secretory system chaperone-likeH: Frataxin-like (From Topology)T: Frataxin-likeF: Frataxin_CyayECOD (1.6)
X [auth L]Frataxin_Cyaye5treL1 A: a+b two layersX: Type III secretory system chaperone-likeH: Frataxin-like (From Topology)T: Frataxin-likeF: Frataxin_CyayECOD (1.6)
Z [auth M]Frataxin_Cyaye5treM1 A: a+b two layersX: Type III secretory system chaperone-likeH: Frataxin-like (From Topology)T: Frataxin-likeF: Frataxin_CyayECOD (1.6)
V [auth K]Frataxin_Cyaye5treK1 A: a+b two layersX: Type III secretory system chaperone-likeH: Frataxin-like (From Topology)T: Frataxin-likeF: Frataxin_CyayECOD (1.6)
DA [auth O]Frataxin_Cyaye5treO1 A: a+b two layersX: Type III secretory system chaperone-likeH: Frataxin-like (From Topology)T: Frataxin-likeF: Frataxin_CyayECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF01491Frataxin-like domain (Frataxin_Cyay)Frataxin-like domainThis family contains proteins that have a domain related to the globular C-terminus of Frataxin the protein that is mutated in Friedreich's ataxia. This domain is found in a family of bacterial proteins. The function of this domain is current ...This family contains proteins that have a domain related to the globular C-terminus of Frataxin the protein that is mutated in Friedreich's ataxia. This domain is found in a family of bacterial proteins. The function of this domain is currently unknown. It has been suggested that this family is involved in iron transport.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Iron sulfur cluster assembly protein 1, mitochondrial
Frataxin homolog, mitochondrial

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR011339Iron-sulfur cluster assembly scaffold protein IscUFamily
IPR002871NIF system FeS cluster assembly, NifU, N-terminalDomain
IPR020895Frataxin conserved siteConserved Site
IPR017789FrataxinFamily
IPR036524Frataxin/CyaY superfamilyHomologous Superfamily
IPR002908Frataxin/CyaYFamily