5M63 | pdb_00005m63

Crystal structure of group B Streptococcus type III DP2 oligosaccharide bound to Fab NVS-1-19-5


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
D [auth N]ProQe5m63N1 A: a/b three-layered sandwichesX: HAD domain-likeH: Class I glutamine amidotransferase-likeT: CheY-likeF: ProQECOD (v294.1)
B [auth L]ProQe5m63L1 A: a/b three-layered sandwichesX: HAD domain-likeH: Class I glutamine amidotransferase-likeT: CheY-likeF: ProQECOD (v294.1)
C [auth M]ProQe5m63M1 A: a/b three-layered sandwichesX: HAD domain-likeH: Class I glutamine amidotransferase-likeT: CheY-likeF: ProQECOD (v294.1)
A [auth H]ProQe5m63H1 A: a/b three-layered sandwichesX: HAD domain-likeH: Class I glutamine amidotransferase-likeT: CheY-likeF: ProQECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D [auth N]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
B [auth L]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
C [auth M]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
A [auth H]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
B [auth L],
D [auth N]
NVS-1-19-5 Fab L-KAPPA Oryctolagus cuniculus (rabbit) IGKV1S1*01, IGKJ1-2*02, IGKJ1-2*01, IGKC1*01 V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA IG FAB-GAMMA-1_KAPPA IMGT (202611-0)
A [auth H],
C [auth M]
NVS-1-19-5 Fab VH-CH1 Oryctolagus cuniculus (rabbit) IGHV1S40*01, IGHJ3*01, IGHJ5*01, IGHJ5*02, IGHG*01, IGHG*05, IGHG*02 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-1_KAPPA IMGT (202611-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
B [auth L],
D [auth N]
Light ChainIGKV1 KappapolysaccharideSAbDab (2026-03-27)
A [auth H],
C [auth M]
Heavy ChainIGHV1 -polysaccharideSAbDab (2026-03-27)