Annotations: 5LSK

CRYSTAL STRUCTURE OF THE HUMAN KINETOCHORE MIS12-CENP-C COMPLEX

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Nnf1/Mis12 C-terminal region-like	8090077	3002416	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Nnf1/Mis12 N-terminal domain-like	8090074	3002415	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Nnf1/Mis12 N-terminal domain-like	8090075	3002415	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Nnf1/Mis12 C-terminal region-like	8090079	3002416	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
D [auth N]	PF08641	Kinetochore protein Mis14 like (Mis14)	Kinetochore protein Mis14 like	-	Family
B	PF03980	Nnf1 (Nnf1)	Nnf1	-	Family
A	PF05859	Mis12 protein (Mis12)	Mis12 protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D [auth N]	Kinetochore-associated protein NSL1 homolog	-	metaphase chromosome alignment localization attachment of spindle microtubules to kinetochore chromosome localization organelle localization nuclear chromosome segregation cellular process cell cycle chromosome segregation cell cycle process mitotic nuclear division organelle fission chromosome organization sister chromatid segregation metaphase chromosome alignment localization attachment of spindle microtubules to kinetochore chromosome localization organelle localization nuclear chromosome segregation cellular process cell cycle chromosome segregation cell cycle process mitotic nuclear division organelle fission chromosome organization sister chromatid segregation mitotic cell cycle cellular component organization organelle organization nuclear division mitotic cell cycle process mitotic sister chromatid segregation cellular component organization or biogenesis cell division	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle spindle pole microtubule cytoskeleton chromosome chromosomal region cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle spindle pole microtubule cytoskeleton chromosome chromosomal region kinetochore chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule nuclear body nucleoplasm organelle lumen nuclear ribonucleoprotein granule nuclear lumen protein-containing complex MIS12/MIND type complex outer kinetochore
E [auth P]	Centromere protein C	DNA binding binding nucleic acid binding sequence-specific DNA binding sequence-specific double-stranded DNA binding double-stranded DNA binding centromeric DNA binding identical protein binding protein binding	cellular process cell cycle mitotic cell cycle organelle assembly protein-containing complex organization chromosome organization membraneless organelle assembly cellular component organization cellular component biogenesis organelle organization cellular component assembly kinetochore assembly protein-containing complex assembly kinetochore organization cellular process cell cycle mitotic cell cycle organelle assembly protein-containing complex organization chromosome organization membraneless organelle assembly cellular component organization cellular component biogenesis organelle organization cellular component assembly kinetochore assembly protein-containing complex assembly kinetochore organization cellular component organization or biogenesis mitotic metaphase chromosome alignment metaphase chromosome alignment localization chromosome localization organelle localization mitotic sister chromatid segregation chromosome segregation cell cycle process mitotic nuclear division attachment of spindle microtubules to kinetochore organelle fission attachment of mitotic spindle microtubules to kinetochore sister chromatid segregation nuclear division mitotic cell cycle process nuclear chromosome segregation cell division meiotic chromosome segregation sexual reproduction reproductive process attachment of meiotic spindle microtubules to kinetochore meiotic cell cycle process meiotic metaphase I homologous chromosome alignment meiosis I meiotic nuclear division meiotic cell cycle spindle attachment to meiosis I kinetochore meiosis I cell cycle process meiotic metaphase chromosome alignment homologous chromosome segregation	intracellular anatomical structure intracellular membraneless organelle chromosome chromosomal region kinetochore intracellular organelle cellular anatomical structure organelle membraneless organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome cytoplasm intracellular anatomical structure intracellular membraneless organelle chromosome chromosomal region kinetochore intracellular organelle cellular anatomical structure organelle membraneless organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nuclear body nucleoplasm organelle lumen nuclear lumen pericentric heterochromatin chromatin heterochromatin
C [auth D]	Kinetochore-associated protein DSN1 homolog	-	metaphase chromosome alignment localization attachment of spindle microtubules to kinetochore chromosome localization organelle localization nuclear chromosome segregation cellular process cell cycle chromosome segregation cell cycle process cell division	intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle spindle pole microtubule cytoskeleton chromosome chromosomal region kinetochore chromosome, centromeric region intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle spindle pole microtubule cytoskeleton chromosome chromosomal region kinetochore chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome extracellular region cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle nucleolus intracellular organelle lumen organelle lumen fibrillar center nuclear lumen lytic vacuole intracellular vesicle cytoplasmic vesicle lumen vacuolar lumen endomembrane system cytoplasmic vesicle vesicle lysosome vesicle lumen azurophil granule vacuole secretory granule lumen azurophil granule lumen secretory granule primary lysosome secretory vesicle nuclear body nucleoplasm protein-containing complex MIS12/MIND type complex outer kinetochore
B	Polyamine-modulated factor 1	LRR domain binding protein binding binding protein domain specific binding leucine zipper domain binding transcription coactivator activity transcription regulator activity transcription coregulator activity	metaphase chromosome alignment localization attachment of spindle microtubules to kinetochore chromosome localization organelle localization nuclear chromosome segregation cellular process cell cycle chromosome segregation cell cycle process cell division RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process metaphase chromosome alignment localization attachment of spindle microtubules to kinetochore chromosome localization organelle localization nuclear chromosome segregation cellular process cell cycle chromosome segregation cell cycle process cell division RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process transcription by RNA polymerase II biosynthetic process metabolic process macromolecule metabolic process	intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle spindle pole microtubule cytoskeleton chromosome chromosomal region kinetochore chromosome, centromeric region intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle spindle pole microtubule cytoskeleton chromosome chromosomal region kinetochore chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome cytoplasm cytosol protein-containing complex transcription regulator complex MIS12/MIND type complex outer kinetochore membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
A	Protein MIS12 homolog	-	metaphase chromosome alignment localization attachment of spindle microtubules to kinetochore chromosome localization organelle localization nuclear chromosome segregation cellular process cell cycle chromosome segregation cell cycle process organelle assembly protein-containing complex organization chromosome organization membraneless organelle assembly metaphase chromosome alignment localization attachment of spindle microtubules to kinetochore chromosome localization organelle localization nuclear chromosome segregation cellular process cell cycle chromosome segregation cell cycle process organelle assembly protein-containing complex organization chromosome organization membraneless organelle assembly cellular component organization cellular component biogenesis organelle organization cellular component assembly kinetochore assembly protein-containing complex assembly kinetochore organization cellular component organization or biogenesis mitotic metaphase chromosome alignment mitotic cell cycle mitotic sister chromatid segregation mitotic nuclear division organelle fission attachment of mitotic spindle microtubules to kinetochore sister chromatid segregation nuclear division mitotic cell cycle process cell division	intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle spindle pole microtubule cytoskeleton chromosome chromosomal region kinetochore chromosome, centromeric region intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle spindle pole microtubule cytoskeleton chromosome chromosomal region kinetochore chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome cytoplasm cytosol protein-containing complex MIS12/MIND type complex outer kinetochore membrane-bounded organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D [auth N]	IPR013950	Kinetochore Mis14/Nsl1	Family
E [auth P]	IPR028052	Kinetochore assembly subunit CENP-C, N-terminal domain	Domain
E [auth P]	IPR025974	Mif2/CENP-C cupin domain	Domain
E [auth P]	IPR028386	Centromere protein C/Mif2/cnp3	Family
E [auth P]	IPR028931	CENP-C, middle DNMT3B-binding domain	Domain
E [auth P]	IPR014710	RmlC-like jelly roll fold	Homologous Superfamily
E [auth P]	IPR011051	RmlC-like cupin domain superfamily	Homologous Superfamily
C [auth D]	IPR013218	Kinetochore-associated protein Dsn1/Mis13	Family
B	IPR007128	Nuclear MIS12/MIND complex subunit PMF1/Nnf1	Family
A	IPR008685	Centromere protein Mis12	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

5LSK | pdb_00005lsk

CRYSTAL STRUCTURE OF THE HUMAN KINETOCHORE MIS12-CENP-C COMPLEX

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage