Annotations: 5LSK

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Nnf1/Mis12 N-terminal domain-like	8090075	3002415	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Nnf1/Mis12 C-terminal region-like	8090079	3002416	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Nnf1/Mis12 C-terminal region-like	8090077	3002416	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Nnf1/Mis12 N-terminal domain-like	8090074	3002415	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF05859	Mis12 protein (Mis12)	Mis12 protein	-	Family
B	PF03980	Nnf1 (Nnf1)	Nnf1	-	Family
C [auth D]	PF08202	Mis12-Mtw1 protein family (MIS13)	Mis12-Mtw1 protein family	-	Family
D [auth N]	PF08641	Kinetochore protein Mis14 like (Mis14)	Kinetochore protein Mis14 like	-	Family
E [auth P]	PF15622	Kinetochore assembly subunit CENP-C N-terminal (CENP_C_N)	Kinetochore assembly subunit CENP-C N-terminal	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Protein MIS12 homolog	-	establishment of organelle localization cellular localization attachment of spindle microtubules to kinetochore establishment of localization metaphase chromosome alignment localization chromosome localization organelle localization establishment of localization in cell nuclear chromosome segregation cellular process cell cycle establishment of chromosome localization chromosome segregation establishment of organelle localization cellular localization attachment of spindle microtubules to kinetochore establishment of localization metaphase chromosome alignment localization chromosome localization organelle localization establishment of localization in cell nuclear chromosome segregation cellular process cell cycle establishment of chromosome localization chromosome segregation cell cycle process mitotic nuclear division organelle fission chromosome organization sister chromatid segregation mitotic cell cycle cellular component organization organelle organization nuclear division mitotic cell cycle process mitotic sister chromatid segregation cellular component organization or biogenesis organelle assembly protein-containing complex organization non-membrane-bounded organelle assembly protein-DNA complex assembly cellular component biogenesis protein-DNA complex organization cellular component assembly kinetochore assembly protein-containing complex assembly kinetochore organization centromere complex assembly mitotic metaphase chromosome alignment attachment of mitotic spindle microtubules to kinetochore cell division	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol intracellular organelle cytoskeleton spindle organelle intracellular non-membrane-bounded organelle spindle pole microtubule cytoskeleton non-membrane-bounded organelle chromosome chromosomal region intracellular anatomical structure cytoplasm cellular anatomical entity cytosol intracellular organelle cytoskeleton spindle organelle intracellular non-membrane-bounded organelle spindle pole microtubule cytoskeleton non-membrane-bounded organelle chromosome chromosomal region kinetochore chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome protein-containing complex MIS12/MIND type complex outer kinetochore membrane-bounded organelle nucleus intracellular membrane-bounded organelle
B	Polyamine-modulated factor 1	LRR domain binding protein binding binding protein domain specific binding leucine zipper domain binding transcription coactivator activity transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity	establishment of organelle localization cellular localization attachment of spindle microtubules to kinetochore establishment of localization metaphase chromosome alignment localization chromosome localization organelle localization establishment of localization in cell nuclear chromosome segregation cellular process cell cycle establishment of chromosome localization chromosome segregation establishment of organelle localization cellular localization attachment of spindle microtubules to kinetochore establishment of localization metaphase chromosome alignment localization chromosome localization organelle localization establishment of localization in cell nuclear chromosome segregation cellular process cell cycle establishment of chromosome localization chromosome segregation cell cycle process cell division cellular biosynthetic process cellular metabolic process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription organic cyclic compound metabolic process nucleic acid biosynthetic process transcription by RNA polymerase II organic substance metabolic process biosynthetic process organic cyclic compound biosynthetic process organic substance biosynthetic process metabolic process macromolecule metabolic process	intracellular organelle intracellular anatomical structure cytoskeleton spindle organelle intracellular non-membrane-bounded organelle spindle pole cellular anatomical entity microtubule cytoskeleton non-membrane-bounded organelle chromosome chromosomal region kinetochore chromosome, centromeric region intracellular organelle intracellular anatomical structure cytoskeleton spindle organelle intracellular non-membrane-bounded organelle spindle pole cellular anatomical entity microtubule cytoskeleton non-membrane-bounded organelle chromosome chromosomal region kinetochore chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome membrane-bounded organelle Golgi apparatus cytoplasm intracellular membrane-bounded organelle endomembrane system cytosol protein-containing complex transcription regulator complex MIS12/MIND type complex outer kinetochore nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
C [auth D]	Kinetochore-associated protein DSN1 homolog	-	establishment of organelle localization cellular localization attachment of spindle microtubules to kinetochore establishment of localization metaphase chromosome alignment localization chromosome localization organelle localization establishment of localization in cell nuclear chromosome segregation cellular process cell cycle establishment of chromosome localization chromosome segregation establishment of organelle localization cellular localization attachment of spindle microtubules to kinetochore establishment of localization metaphase chromosome alignment localization chromosome localization organelle localization establishment of localization in cell nuclear chromosome segregation cellular process cell cycle establishment of chromosome localization chromosome segregation cell cycle process cell division cell population proliferation muscle cell proliferation skeletal muscle satellite cell proliferation skeletal muscle cell proliferation striated muscle cell proliferation mitotic nuclear division organelle fission chromosome organization sister chromatid segregation mitotic cell cycle cellular component organization organelle organization nuclear division mitotic cell cycle process mitotic sister chromatid segregation cellular component organization or biogenesis	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle cellular anatomical entity nucleolus intracellular organelle lumen intracellular organelle organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen non-membrane-bounded organelle membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle cellular anatomical entity nucleolus intracellular organelle lumen intracellular organelle organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen non-membrane-bounded organelle cytoskeleton spindle spindle pole microtubule cytoskeleton chromosome chromosomal region kinetochore chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome extracellular region cytoplasm cytosol fibrillar center lytic vacuole intracellular vesicle cytoplasmic vesicle lumen vacuolar lumen endomembrane system cytoplasmic vesicle vesicle lysosome vesicle lumen azurophil granule vacuole secretory granule lumen azurophil granule lumen secretory granule primary lysosome secretory vesicle nuclear body nucleoplasm protein-containing complex MIS12/MIND type complex outer kinetochore
D [auth N]	Kinetochore-associated protein NSL1 homolog	-	establishment of organelle localization cellular localization attachment of spindle microtubules to kinetochore establishment of localization metaphase chromosome alignment localization chromosome localization organelle localization establishment of localization in cell nuclear chromosome segregation cellular process cell cycle establishment of chromosome localization chromosome segregation establishment of organelle localization cellular localization attachment of spindle microtubules to kinetochore establishment of localization metaphase chromosome alignment localization chromosome localization organelle localization establishment of localization in cell nuclear chromosome segregation cellular process cell cycle establishment of chromosome localization chromosome segregation cell cycle process mitotic nuclear division organelle fission chromosome organization sister chromatid segregation mitotic cell cycle cellular component organization organelle organization nuclear division mitotic cell cycle process mitotic sister chromatid segregation cellular component organization or biogenesis cell division	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol intracellular organelle cytoskeleton spindle organelle intracellular non-membrane-bounded organelle spindle pole microtubule cytoskeleton non-membrane-bounded organelle chromosome chromosomal region intracellular anatomical structure cytoplasm cellular anatomical entity cytosol intracellular organelle cytoskeleton spindle organelle intracellular non-membrane-bounded organelle spindle pole microtubule cytoskeleton non-membrane-bounded organelle chromosome chromosomal region kinetochore chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck nuclear body nucleoplasm organelle lumen nuclear lumen protein-containing complex MIS12/MIND type complex outer kinetochore
E [auth P]	Centromere protein C	DNA binding binding organic cyclic compound binding nucleic acid binding sequence-specific DNA binding sequence-specific double-stranded DNA binding double-stranded DNA binding centromeric DNA binding identical protein binding protein binding	cellular process cell cycle mitotic cell cycle organelle assembly protein-containing complex organization non-membrane-bounded organelle assembly chromosome organization protein-DNA complex assembly cellular component organization cellular component biogenesis protein-DNA complex organization organelle organization cellular component assembly kinetochore assembly cellular process cell cycle mitotic cell cycle organelle assembly protein-containing complex organization non-membrane-bounded organelle assembly chromosome organization protein-DNA complex assembly cellular component organization cellular component biogenesis protein-DNA complex organization organelle organization cellular component assembly kinetochore assembly protein-containing complex assembly kinetochore organization cellular component organization or biogenesis centromere complex assembly establishment of organelle localization cellular localization mitotic metaphase chromosome alignment metaphase chromosome alignment localization chromosome localization organelle localization establishment of localization in cell mitotic sister chromatid segregation chromosome segregation cell cycle process mitotic nuclear division attachment of spindle microtubules to kinetochore organelle fission attachment of mitotic spindle microtubules to kinetochore sister chromatid segregation establishment of localization nuclear division mitotic cell cycle process nuclear chromosome segregation establishment of chromosome localization cell division meiotic chromosome segregation sexual reproduction reproductive process attachment of meiotic spindle microtubules to kinetochore meiotic cell cycle process meiotic metaphase I homologous chromosome alignment meiosis I meiotic nuclear division meiotic cell cycle spindle attachment to meiosis I kinetochore meiosis I cell cycle process meiotic metaphase chromosome alignment homologous chromosome segregation	midbody cellular anatomical entity intracellular anatomical structure chromosome chromosomal region kinetochore intracellular organelle organelle intracellular non-membrane-bounded organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome non-membrane-bounded organelle midbody cellular anatomical entity intracellular anatomical structure chromosome chromosomal region kinetochore intracellular organelle organelle intracellular non-membrane-bounded organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome non-membrane-bounded organelle cytoplasm cytosol protein-containing complex inner kinetochore membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nuclear body nucleoplasm organelle lumen nuclear lumen pericentric heterochromatin protein-DNA complex chromatin heterochromatin

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR008685	Centromere protein Mis12	Family
B	IPR007128	Nuclear MIS12/MIND complex subunit PMF1/Nnf1	Family
C [auth D]	IPR013218	Kinetochore-associated protein Dsn1/Mis13	Family
D [auth N]	IPR013950	Kinetochore Mis14/Nsl1	Family
E [auth P]	IPR028052	Kinetochore assembly subunit CENP-C, N-terminal domain	Domain
E [auth P]	IPR025974	Mif2/CENP-C cupin domain	Domain
E [auth P]	IPR028386	Centromere protein C/Mif2/cnp3	Family
E [auth P]	IPR028931	CENP-C, middle DNMT3B-binding domain	Domain
E [auth P]	IPR014710	RmlC-like jelly roll fold	Homologous Superfamily
E [auth P]	IPR011051	RmlC-like cupin domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q9H081	Liver Cirrhosis, Experimental glioblastoma medulloblastoma ovarian cancer malignant ependymoma primitive neuroectodermal tumor
B	Pharos: Q6P1K2	cerebrovascular disorder ovarian cancer testicular germ cell tumor large cell medulloblastoma rheumatoid arthritis medulloblastoma testicular cancer
C [auth D]	Pharos: Q9H410	malignant mesothelioma medulloblastoma
D [auth N]	Pharos: Q96IY1	leprosy medulloblastoma plasma cell myeloma lung cancer osteosarcoma lymphoplasmacytic lymphoma ovarian cancer
E [auth P]	Pharos: Q03188	acute myeloid leukemia

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.