5LNX | pdb_00005lnx

Crystal structure of MmgC, an acyl-CoA dehydrogenase from bacillus subtilis.


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Cd5lnxc2 All alpha proteins Bromodomain-like Acyl-CoA dehydrogenase C-terminal domain-like automated matches automated matches (Bacillus subtilis subsp. subtilis str. 168 ) [TaxId: 224308 ], SCOPe (2.08)
Cd5lnxc1 Multi-domain proteins (alpha and beta) Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase NM domain-like automated matches automated matches (Bacillus subtilis subsp. subtilis str. 168 ) [TaxId: 224308 ], SCOPe (2.08)
Gd5lnxg2 All alpha proteins Bromodomain-like Acyl-CoA dehydrogenase C-terminal domain-like automated matches automated matches (Bacillus subtilis subsp. subtilis str. 168 ) [TaxId: 224308 ], SCOPe (2.08)
Gd5lnxg1 Multi-domain proteins (alpha and beta) Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase NM domain-like automated matches automated matches (Bacillus subtilis subsp. subtilis str. 168 ) [TaxId: 224308 ], SCOPe (2.08)
Hd5lnxh2 All alpha proteins Bromodomain-like Acyl-CoA dehydrogenase C-terminal domain-like automated matches automated matches (Bacillus subtilis subsp. subtilis str. 168 ) [TaxId: 224308 ], SCOPe (2.08)
Hd5lnxh1 Multi-domain proteins (alpha and beta) Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase NM domain-like automated matches automated matches (Bacillus subtilis subsp. subtilis str. 168 ) [TaxId: 224308 ], SCOPe (2.08)
Fd5lnxf2 All alpha proteins Bromodomain-like Acyl-CoA dehydrogenase C-terminal domain-like automated matches automated matches (Bacillus subtilis subsp. subtilis str. 168 ) [TaxId: 224308 ], SCOPe (2.08)
Fd5lnxf1 Multi-domain proteins (alpha and beta) Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase NM domain-like automated matches automated matches (Bacillus subtilis subsp. subtilis str. 168 ) [TaxId: 224308 ], SCOPe (2.08)
Ed5lnxe2 All alpha proteins Bromodomain-like Acyl-CoA dehydrogenase C-terminal domain-like automated matches automated matches (Bacillus subtilis subsp. subtilis str. 168 ) [TaxId: 224308 ], SCOPe (2.08)
Ed5lnxe1 Multi-domain proteins (alpha and beta) Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase NM domain-like automated matches automated matches (Bacillus subtilis subsp. subtilis str. 168 ) [TaxId: 224308 ], SCOPe (2.08)
Dd5lnxd2 All alpha proteins Bromodomain-like Acyl-CoA dehydrogenase C-terminal domain-like automated matches automated matches (Bacillus subtilis subsp. subtilis str. 168 ) [TaxId: 224308 ], SCOPe (2.08)
Dd5lnxd1 Multi-domain proteins (alpha and beta) Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase NM domain-like automated matches automated matches (Bacillus subtilis subsp. subtilis str. 168 ) [TaxId: 224308 ], SCOPe (2.08)
Bd5lnxb2 All alpha proteins Bromodomain-like Acyl-CoA dehydrogenase C-terminal domain-like automated matches automated matches (Bacillus subtilis subsp. subtilis str. 168 ) [TaxId: 224308 ], SCOPe (2.08)
Bd5lnxb1 Multi-domain proteins (alpha and beta) Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase NM domain-like automated matches automated matches (Bacillus subtilis subsp. subtilis str. 168 ) [TaxId: 224308 ], SCOPe (2.08)
Ad5lnxa2 All alpha proteins Bromodomain-like Acyl-CoA dehydrogenase C-terminal domain-like automated matches automated matches (Bacillus subtilis subsp. subtilis str. 168 ) [TaxId: 224308 ], SCOPe (2.08)
Ad5lnxa1 Multi-domain proteins (alpha and beta) Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase NM domain-like automated matches automated matches (Bacillus subtilis subsp. subtilis str. 168 ) [TaxId: 224308 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CAcyl-CoA_dh_Me5lnxC2 A: beta complex topologyX: Acyl-CoA dehydrogenase middle domain-like (From Topology)H: Acyl-CoA dehydrogenase middle domain-like (From Topology)T: Acyl-CoA dehydrogenase middle domain-likeF: Acyl-CoA_dh_MECOD (1.6)
CAcyl-CoA_dh_Ne5lnxC1 A: alpha arraysX: Acyl-CoA dehydrogenase N-terminal domain-like (From Topology)H: Acyl-CoA dehydrogenase N-terminal domain-like (From Topology)T: Acyl-CoA dehydrogenase N-terminal domain-likeF: Acyl-CoA_dh_NECOD (1.6)
CAcyl-CoA_dh_1e5lnxC3 A: alpha bundlesX: Bromodomain-likeH: Acyl-CoA dehydrogenase C-terminal domain-like (From Topology)T: Acyl-CoA dehydrogenase C-terminal domain-likeF: Acyl-CoA_dh_1ECOD (1.6)
GAcyl-CoA_dh_Me5lnxG3 A: beta complex topologyX: Acyl-CoA dehydrogenase middle domain-like (From Topology)H: Acyl-CoA dehydrogenase middle domain-like (From Topology)T: Acyl-CoA dehydrogenase middle domain-likeF: Acyl-CoA_dh_MECOD (1.6)
GAcyl-CoA_dh_Ne5lnxG1 A: alpha arraysX: Acyl-CoA dehydrogenase N-terminal domain-like (From Topology)H: Acyl-CoA dehydrogenase N-terminal domain-like (From Topology)T: Acyl-CoA dehydrogenase N-terminal domain-likeF: Acyl-CoA_dh_NECOD (1.6)
GAcyl-CoA_dh_1e5lnxG2 A: alpha bundlesX: Bromodomain-likeH: Acyl-CoA dehydrogenase C-terminal domain-like (From Topology)T: Acyl-CoA dehydrogenase C-terminal domain-likeF: Acyl-CoA_dh_1ECOD (1.6)
HAcyl-CoA_dh_Me5lnxH1 A: beta complex topologyX: Acyl-CoA dehydrogenase middle domain-like (From Topology)H: Acyl-CoA dehydrogenase middle domain-like (From Topology)T: Acyl-CoA dehydrogenase middle domain-likeF: Acyl-CoA_dh_MECOD (1.6)
HAcyl-CoA_dh_Ne5lnxH3 A: alpha arraysX: Acyl-CoA dehydrogenase N-terminal domain-like (From Topology)H: Acyl-CoA dehydrogenase N-terminal domain-like (From Topology)T: Acyl-CoA dehydrogenase N-terminal domain-likeF: Acyl-CoA_dh_NECOD (1.6)
HAcyl-CoA_dh_1e5lnxH2 A: alpha bundlesX: Bromodomain-likeH: Acyl-CoA dehydrogenase C-terminal domain-like (From Topology)T: Acyl-CoA dehydrogenase C-terminal domain-likeF: Acyl-CoA_dh_1ECOD (1.6)
FAcyl-CoA_dh_Me5lnxF1 A: beta complex topologyX: Acyl-CoA dehydrogenase middle domain-like (From Topology)H: Acyl-CoA dehydrogenase middle domain-like (From Topology)T: Acyl-CoA dehydrogenase middle domain-likeF: Acyl-CoA_dh_MECOD (1.6)
FAcyl-CoA_dh_Ne5lnxF3 A: alpha arraysX: Acyl-CoA dehydrogenase N-terminal domain-like (From Topology)H: Acyl-CoA dehydrogenase N-terminal domain-like (From Topology)T: Acyl-CoA dehydrogenase N-terminal domain-likeF: Acyl-CoA_dh_NECOD (1.6)
FAcyl-CoA_dh_1e5lnxF2 A: alpha bundlesX: Bromodomain-likeH: Acyl-CoA dehydrogenase C-terminal domain-like (From Topology)T: Acyl-CoA dehydrogenase C-terminal domain-likeF: Acyl-CoA_dh_1ECOD (1.6)
EAcyl-CoA_dh_Me5lnxE2 A: beta complex topologyX: Acyl-CoA dehydrogenase middle domain-like (From Topology)H: Acyl-CoA dehydrogenase middle domain-like (From Topology)T: Acyl-CoA dehydrogenase middle domain-likeF: Acyl-CoA_dh_MECOD (1.6)
EAcyl-CoA_dh_Ne5lnxE3 A: alpha arraysX: Acyl-CoA dehydrogenase N-terminal domain-like (From Topology)H: Acyl-CoA dehydrogenase N-terminal domain-like (From Topology)T: Acyl-CoA dehydrogenase N-terminal domain-likeF: Acyl-CoA_dh_NECOD (1.6)
EAcyl-CoA_dh_1e5lnxE1 A: alpha bundlesX: Bromodomain-likeH: Acyl-CoA dehydrogenase C-terminal domain-like (From Topology)T: Acyl-CoA dehydrogenase C-terminal domain-likeF: Acyl-CoA_dh_1ECOD (1.6)
DAcyl-CoA_dh_Me5lnxD1 A: beta complex topologyX: Acyl-CoA dehydrogenase middle domain-like (From Topology)H: Acyl-CoA dehydrogenase middle domain-like (From Topology)T: Acyl-CoA dehydrogenase middle domain-likeF: Acyl-CoA_dh_MECOD (1.6)
DAcyl-CoA_dh_Ne5lnxD3 A: alpha arraysX: Acyl-CoA dehydrogenase N-terminal domain-like (From Topology)H: Acyl-CoA dehydrogenase N-terminal domain-like (From Topology)T: Acyl-CoA dehydrogenase N-terminal domain-likeF: Acyl-CoA_dh_NECOD (1.6)
DAcyl-CoA_dh_1e5lnxD2 A: alpha bundlesX: Bromodomain-likeH: Acyl-CoA dehydrogenase C-terminal domain-like (From Topology)T: Acyl-CoA dehydrogenase C-terminal domain-likeF: Acyl-CoA_dh_1ECOD (1.6)
BAcyl-CoA_dh_Me5lnxB2 A: beta complex topologyX: Acyl-CoA dehydrogenase middle domain-like (From Topology)H: Acyl-CoA dehydrogenase middle domain-like (From Topology)T: Acyl-CoA dehydrogenase middle domain-likeF: Acyl-CoA_dh_MECOD (1.6)
BAcyl-CoA_dh_Ne5lnxB1 A: alpha arraysX: Acyl-CoA dehydrogenase N-terminal domain-like (From Topology)H: Acyl-CoA dehydrogenase N-terminal domain-like (From Topology)T: Acyl-CoA dehydrogenase N-terminal domain-likeF: Acyl-CoA_dh_NECOD (1.6)
BAcyl-CoA_dh_1e5lnxB3 A: alpha bundlesX: Bromodomain-likeH: Acyl-CoA dehydrogenase C-terminal domain-like (From Topology)T: Acyl-CoA dehydrogenase C-terminal domain-likeF: Acyl-CoA_dh_1ECOD (1.6)
AAcyl-CoA_dh_Me5lnxA1 A: beta complex topologyX: Acyl-CoA dehydrogenase middle domain-like (From Topology)H: Acyl-CoA dehydrogenase middle domain-like (From Topology)T: Acyl-CoA dehydrogenase middle domain-likeF: Acyl-CoA_dh_MECOD (1.6)
AAcyl-CoA_dh_Ne5lnxA2 A: alpha arraysX: Acyl-CoA dehydrogenase N-terminal domain-like (From Topology)H: Acyl-CoA dehydrogenase N-terminal domain-like (From Topology)T: Acyl-CoA dehydrogenase N-terminal domain-likeF: Acyl-CoA_dh_NECOD (1.6)
AAcyl-CoA_dh_1e5lnxA3 A: alpha bundlesX: Bromodomain-likeH: Acyl-CoA dehydrogenase C-terminal domain-like (From Topology)T: Acyl-CoA dehydrogenase C-terminal domain-likeF: Acyl-CoA_dh_1ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A domain 1CATH (utative)
C2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A domain 2CATH (utative)
C1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A domain 3CATH (utative)
G1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A domain 1CATH (utative)
G2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A domain 2CATH (utative)
G1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A domain 3CATH (utative)
H1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A domain 1CATH (utative)
H2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A domain 2CATH (utative)
H1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A domain 3CATH (utative)
F1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A domain 1CATH (utative)
F2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A domain 2CATH (utative)
F1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A domain 3CATH (utative)
E1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A domain 1CATH (utative)
E2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A domain 2CATH (utative)
E1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A domain 3CATH (utative)
D1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A domain 1CATH (utative)
D2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A domain 2CATH (utative)
D1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A domain 3CATH (utative)
B1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A domain 1CATH (utative)
B2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A domain 2CATH (utative)
B1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A domain 3CATH (utative)
A1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A domain 1CATH (utative)
A2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A domain 2CATH (utative)
A1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A domain 3CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF02771Acyl-CoA dehydrogenase, N-terminal domain (Acyl-CoA_dh_N)Acyl-CoA dehydrogenase, N-terminal domainThe N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain. Domain
A, B, C, D, E
PF02770Acyl-CoA dehydrogenase, middle domain (Acyl-CoA_dh_M)Acyl-CoA dehydrogenase, middle domainCentral domain of Acyl-CoA dehydrogenase has a beta-barrel fold. Domain
A, B, C, D, E
PF00441Acyl-CoA dehydrogenase, C-terminal domain (Acyl-CoA_dh_1)Acyl-CoA dehydrogenase, C-terminal domainC-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Acyl-CoA dehydrogenase

InterPro: Protein Family Classification InterPro Database Homepage