5KED | pdb_00005ked

Structure of the 2.65 Angstrom P2(1) crystal of K. pneumonia MrkH

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth D]SCOP2B SuperfamilyPilZ domain-like 8091590 3000480 SCOP2B (2022-06-29)
A [auth D]SCOP2B SuperfamilyPilZ domain-like 8091591 3000480 SCOP2B (2022-06-29)
B [auth A]SCOP2B SuperfamilyPilZ domain-like 8091590 3000480 SCOP2B (2022-06-29)
B [auth A]SCOP2B SuperfamilyPilZ domain-like 8091591 3000480 SCOP2B (2022-06-29)
C [auth B]SCOP2B SuperfamilyPilZ domain-like 8091590 3000480 SCOP2B (2022-06-29)
C [auth B]SCOP2B SuperfamilyPilZ domain-like 8091591 3000480 SCOP2B (2022-06-29)
D [auth C]SCOP2B SuperfamilyPilZ domain-like 8091591 3000480 SCOP2B (2022-06-29)
D [auth C]SCOP2B SuperfamilyPilZ domain-like 8091590 3000480 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth D]e5kedD1 A: a/b three-layered sandwichesX: omega toxin-likeH: omega toxin-relatedT: omega toxin-relatedF:ECOD (v294.1)
B [auth A]CDC48_Ne5kedA1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: CDC48_NECOD (v294.1)
C [auth B]SPRYe5kedB1 A: a/b three-layered sandwichesX: Type II ABC importer transmembrane domain foldH: Type II ABC importer transmembrane domain foldT: Type II ABC importer transmembrane domain foldF: SPRYECOD (v294.1)
D [auth C]Fer4, Fer4_7, Fer4_10e5kedC1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Aha1/BPI domain-likeF: Fer4, Fer4_7, Fer4_10ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A [auth D]2.40.10.220 Mainly Beta Beta Barrel Thrombin, subunit H predicted glycosyltransferase like domainsCATH (4.3.0)
B [auth A]2.40.10.220 Mainly Beta Beta Barrel Thrombin, subunit H predicted glycosyltransferase like domainsCATH (4.3.0)
C [auth B]2.40.10.220 Mainly Beta Beta Barrel Thrombin, subunit H predicted glycosyltransferase like domainsCATH (4.3.0)
D [auth C]2.40.10.220 Mainly Beta Beta Barrel Thrombin, subunit H predicted glycosyltransferase like domainsCATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth D],
B [auth A],
C [auth B],
D [auth C]		Flagellar brake protein YcgR - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth D],
B [auth A],
C [auth B],
D [auth C]		IPR054375MrkH-like, YcgR-like domainDomain