5J37
Crystal structure of 60-mer BFDV Capsid Protein in complex with single stranded DNA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth E] | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8091683 | 3000918 | SCOP2B (2022-06-29) |
C [auth A] | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8091683 | 3000918 | SCOP2B (2022-06-29) |
E [auth B] | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8091683 | 3000918 | SCOP2B (2022-06-29) |
G [auth C] | SCOP2 Family | Circovirus-like VP | 8050385 | 4006869 | SCOP2 (2022-06-29) |
G [auth C] | SCOP2 Superfamily | Positive stranded ssRNA viruses-like | 8091683 | 3000918 | SCOP2 (2022-06-29) |
I [auth D] | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8091683 | 3000918 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth E] | PF02443 | e5j37E1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF02443 | ECOD (1.6) |
C [auth A] | PF02443 | e5j37A1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF02443 | ECOD (1.6) |
E [auth B] | PF02443 | e5j37B1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF02443 | ECOD (1.6) |
G [auth C] | PF02443 | e5j37C1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF02443 | ECOD (1.6) |
I [auth D] | PF02443 | e5j37D1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF02443 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth E] | 2.60.120.950 | Mainly Beta | Sandwich | Jelly Rolls | Circovirus capsid protein | CATH (4.3.0) |
C [auth A] | 2.60.120.950 | Mainly Beta | Sandwich | Jelly Rolls | Circovirus capsid protein | CATH (4.3.0) |
E [auth B] | 2.60.120.950 | Mainly Beta | Sandwich | Jelly Rolls | Circovirus capsid protein | CATH (4.3.0) |
G [auth C] | 2.60.120.950 | Mainly Beta | Sandwich | Jelly Rolls | Circovirus capsid protein | CATH (4.3.0) |
I [auth D] | 2.60.120.950 | Mainly Beta | Sandwich | Jelly Rolls | Circovirus capsid protein | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth E], C [auth A], E [auth B], G [auth C], I [auth D] | PF02443 | Circovirus capsid protein (Circo_capsid) | Circovirus capsid protein | Circoviruses are small circular single stranded viruses. This family is the capsid protein from viruses such as porcine circovirus [1] and beak and feather disease virus Swiss:Q9YUC8. These proteins are about 220 amino acids long. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth E], C [auth A], E [auth B], G [auth C], I [auth D] | Beak and feather disease virus capsid protein | - |
| |
B [auth F], D [auth G], F [auth H], H [auth I], J | single stranded DNA | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth E], C [auth A], E [auth B], G [auth C], I [auth D] | IPR038652 | Circovirus capsid superfamily | Homologous Superfamily |
A [auth E], C [auth A], E [auth B], G [auth C], I [auth D] | IPR003383 | Circovirus capsid protein | Family |