5J37 | pdb_00005j37

Crystal structure of 60-mer BFDV Capsid Protein in complex with single stranded DNA

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth E]	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8091683	3000918	SCOP2B (2022-06-29)
C [auth A]	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8091683	3000918	SCOP2B (2022-06-29)
E [auth B]	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8091683	3000918	SCOP2B (2022-06-29)
G [auth C]	SCOP2 Family	Circovirus-like VP	8050385	4006869	SCOP2 (2022-06-29)
G [auth C]	SCOP2 Superfamily	Positive stranded ssRNA viruses-like	8091683	3000918	SCOP2 (2022-06-29)
I [auth D]	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8091683	3000918	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth E]	LptE	e5j37E1	A: a/b three-layered sandwiches	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: LptE	ECOD (v294.1)
C [auth A]	LptE	e5j37A1	A: a/b three-layered sandwiches	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: LptE	ECOD (v294.1)
E [auth B]	LptE	e5j37B1	A: a/b three-layered sandwiches	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: LptE	ECOD (v294.1)
G [auth C]	LptE	e5j37C1	A: a/b three-layered sandwiches	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: LptE	ECOD (v294.1)
I [auth D]	LptE	e5j37D1	A: a/b three-layered sandwiches	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: LptE	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A [auth E]	2.60.120.950	Mainly Beta	Sandwich	Jelly Rolls	Circovirus capsid protein	CATH (4.3.0)
C [auth A]	2.60.120.950	Mainly Beta	Sandwich	Jelly Rolls	Circovirus capsid protein	CATH (4.3.0)
E [auth B]	2.60.120.950	Mainly Beta	Sandwich	Jelly Rolls	Circovirus capsid protein	CATH (4.3.0)
G [auth C]	2.60.120.950	Mainly Beta	Sandwich	Jelly Rolls	Circovirus capsid protein	CATH (4.3.0)
I [auth D]	2.60.120.950	Mainly Beta	Sandwich	Jelly Rolls	Circovirus capsid protein	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth F], D [auth G], F [auth H], H [auth I], J	single stranded DNA	-	-	-
A [auth E], C [auth A], E [auth B], G [auth C], I [auth D]	Beak and feather disease virus capsid protein	DNA binding binding nucleic acid binding	virion assembly viral process viral capsid assembly viral life cycle virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host endocytosis involved in viral entry into host cell viral penetration into host nucleus virion assembly viral process viral capsid assembly viral life cycle virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host endocytosis involved in viral entry into host cell viral penetration into host nucleus intracellular transport of virus transport of virus	host cellular component cellular anatomical structure host cell other organism part viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid host intracellular membrane-bounded organelle host intracellular part host cell part host intracellular region host cell nucleus host intracellular organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth E], C [auth A], E [auth B], G [auth C], I [auth D]	IPR038652	Circovirus capsid superfamily	Homologous Superfamily
A [auth E], C [auth A], E [auth B], G [auth C], I [auth D]	IPR003383	Circovirus capsid protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.