Annotations: 5GQR

Crystal structure of PXY-CLE41-SERK2

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth K]	PG_binding_1	e5gqrK1	A: alpha arrays	X: F-type ATP synthase subunit b	H: Bacterial cell wall synthesis membrane enzyme MraY-related	T: Bacterial cell wall synthesis membrane enzyme MraY-related	F: PG_binding_1	ECOD (v295.2)
A [auth B]	PG_binding_1	e5gqrB1	A: alpha arrays	X: F-type ATP synthase subunit b	H: Bacterial cell wall synthesis membrane enzyme MraY-related	T: Bacterial cell wall synthesis membrane enzyme MraY-related	F: PG_binding_1	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C [auth K]	3.80.10.10	Alpha Beta	Alpha-Beta Horseshoe	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	Ribonuclease Inhibitor	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth K]	PF08263	Leucine rich repeat N-terminal domain (LRRNT_2)	Leucine rich repeat N-terminal domain	-	Family
C [auth K]	PF00560	Leucine Rich Repeat (LRR_1)	Leucine Rich Repeat	-	Repeat
A [auth B]	PF13855	Leucine rich repeat (LRR_8)	Leucine rich repeat	-	Repeat
A [auth B]	PF23598	Leucine-rich repeat region (LRR_14)	Leucine-rich repeat region	-	Repeat
A [auth B]	PF08263	Leucine rich repeat N-terminal domain (LRRNT_2)	Leucine rich repeat N-terminal domain	-	Family
A [auth B]	PF00560	Leucine Rich Repeat (LRR_1)	Leucine Rich Repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth K]	Somatic embryogenesis receptor kinase 2	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding protein binding signaling receptor binding protein serine/threonine kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups receptor serine/threonine kinase binding protein serine kinase activity	developmental process multicellular organism development multicellular organismal process gametophyte development anatomical structure development pollen maturation plant gross anatomical part developmental process developmental maturation pollen development cellular response to stimulus regulation of cellular process response to stimulus response to lipid signaling developmental process multicellular organism development multicellular organismal process gametophyte development anatomical structure development pollen maturation plant gross anatomical part developmental process developmental maturation pollen development cellular response to stimulus regulation of cellular process response to stimulus response to lipid signaling hormone-mediated signaling pathway cell communication brassinosteroid mediated signaling pathway cellular response to endogenous stimulus response to hormone response to steroid hormone signal transduction cellular response to steroid hormone stimulus cellular response to hormone stimulus steroid hormone receptor signaling pathway regulation of biological process cell surface receptor signaling pathway response to endogenous stimulus cellular response to brassinosteroid stimulus biological regulation response to oxygen-containing compound cellular response to oxygen-containing compound cellular response to chemical stimulus response to chemical response to brassinosteroid cellular response to lipid cellular process sexual reproduction cellular developmental process reproductive process meiotic cell cycle developmental process involved in reproduction meiotic cell cycle process microsporogenesis sexual sporulation sporulation cell cycle plant-type sporogenesis cell cycle process	cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle
B [auth C]	TDIF	protein binding binding receptor serine/threonine kinase binding signaling receptor binding	developmental process multicellular organismal process plant organ development maintenance of root meristem identity root morphogenesis plant gross anatomical part developmental process stem cell population maintenance plant organ morphogenesis multicellular organism development anatomical structure morphogenesis meristem development meristem maintenance anatomical structure development maintenance of cell number developmental process multicellular organismal process plant organ development maintenance of root meristem identity root morphogenesis plant gross anatomical part developmental process stem cell population maintenance plant organ morphogenesis multicellular organism development anatomical structure morphogenesis meristem development meristem maintenance anatomical structure development maintenance of cell number maintenance of meristem identity root development system development root system development regulation of biological process cellular developmental process signaling biological regulation cell-cell signaling cell communication cell-cell signaling involved in cell fate commitment cell differentiation cellular process cell fate commitment phloem or xylem histogenesis xylem development reproductive system development reproductive process procambium histogenesis developmental process involved in reproduction fruit development embryo development ending in seed dormancy seed development reproductive structure development post-embryonic development embryonic meristem development primary meristem tissue development phloem development meristem initiation axillary shoot meristem initiation shoot system morphogenesis shoot axis formation morphogenesis of a branching structure secondary shoot formation anatomical structure formation involved in morphogenesis anatomical structure arrangement shoot system development plant organ formation meristem structural organization regulation of cellular process regulation of developmental process regulation of cell differentiation	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle extracellular region apoplast
A [auth B]	Leucine-rich repeat receptor-like protein kinase TDR	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding protein serine/threonine kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups protein serine kinase activity	developmental process phloem or xylem histogenesis xylem development anatomical structure development plant gross anatomical part developmental process cellular process cell division multicellular organismal process shoot system morphogenesis shoot axis formation anatomical structure morphogenesis multicellular organism development morphogenesis of a branching structure secondary shoot formation developmental process phloem or xylem histogenesis xylem development anatomical structure development plant gross anatomical part developmental process cellular process cell division multicellular organismal process shoot system morphogenesis shoot axis formation anatomical structure morphogenesis multicellular organism development morphogenesis of a branching structure secondary shoot formation anatomical structure formation involved in morphogenesis shoot system development plant organ formation system development reproductive system development reproductive process procambium histogenesis developmental process involved in reproduction fruit development meristem development embryo development ending in seed dormancy seed development reproductive structure development post-embryonic development embryonic meristem development primary meristem tissue development	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth K]	IPR017441	Protein kinase, ATP binding site	Binding Site
C [auth K]	IPR001611	Leucine-rich repeat	Repeat
C [auth K]	IPR013210	Leucine-rich repeat-containing N-terminal, plant-type	Domain
C [auth K]	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
C [auth K]	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
C [auth K]	IPR000719	Protein kinase domain	Domain
C [auth K]	IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain	Domain
C [auth K]	IPR008271	Serine/threonine-protein kinase, active site	Active Site
B [auth C]	IPR037495	CLAVATA3/ESR (CLE)-related protein 41/42/44	Family
A [auth B]	IPR017441	Protein kinase, ATP binding site	Binding Site
A [auth B]	IPR001611	Leucine-rich repeat	Repeat
A [auth B]	IPR013210	Leucine-rich repeat-containing N-terminal, plant-type	Domain
A [auth B]	IPR050647	Plant LRR receptor-like serine/threonine-protein kinases	Family
A [auth B]	IPR003591	Leucine-rich repeat, typical subtype	Repeat
A [auth B]	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
A [auth B]	IPR055414	Disease resistance R13L4/SHOC-2-like, LRR domain	Domain
A [auth B]	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
A [auth B]	IPR000719	Protein kinase domain	Domain
A [auth B]	IPR008271	Serine/threonine-protein kinase, active site	Active Site

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B [auth C]	HYP	Parent Component: PRO : AA0030 : 4-hydroxy-L-proline MOD:00039