5GKO
Crystal structure of tripartite-type ABC transporter, MacB from Acinetobacter baumannii
External Resource: Annotation
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF12704 | e5gkoA3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF12704 | ECOD (1.6) |
A | PF02687,PF12704 | e5gkoA4 | A: alpha bundles | X: Type II ABC exporter transmembrane domain fold | H: Type II ABC exporter transmembrane domain-related | T: MacB transmembrane domain | F: PF02687,PF12704 | ECOD (1.6) |
A | F_UNCLASSIFIED | e5gkoA2 | A: a+b two layers | X: Alpha-beta plaits | H: ferredoxin-like domain in periplasmic region of MacB (From Topology) | T: ferredoxin-like domain in periplasmic region of MacB | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF00005 | e5gkoA1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00005 | ECOD (1.6) |
B | PF12704 | e5gkoB2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF12704 | ECOD (1.6) |
B | PF02687,PF12704 | e5gkoB4 | A: alpha bundles | X: Type II ABC exporter transmembrane domain fold | H: Type II ABC exporter transmembrane domain-related | T: MacB transmembrane domain | F: PF02687,PF12704 | ECOD (1.6) |
B | F_UNCLASSIFIED | e5gkoB1 | A: a+b two layers | X: Alpha-beta plaits | H: ferredoxin-like domain in periplasmic region of MacB (From Topology) | T: ferredoxin-like domain in periplasmic region of MacB | F: F_UNCLASSIFIED | ECOD (1.6) |
B | PF00005 | e5gkoB3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00005 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF12704 | MacB-like periplasmic core domain (MacB_PCD) | MacB-like periplasmic core domain | - | Family | |
PF02687 | FtsX-like permease family (FtsX) | FtsX-like permease family | - | Family | |
PF00005 | ABC transporter (ABC_tran) | ABC transporter | ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are comp ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR003593 | AAA+ ATPase domain | Domain | |
IPR017871 | ABC transporter-like, conserved site | Conserved Site | |
IPR017911 | MacB-like, ATP-binding domain | Domain | |
IPR003838 | ABC3 transporter permease protein domain | Domain | |
IPR003439 | ABC transporter-like, ATP-binding domain | Domain | |
IPR025857 | MacB-like periplasmic core domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | ABC transporters | FtsX-like permease |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | ATP Binding Cassette (ABC) Transporters | MacB ABC transporter |