5GAS | pdb_00005gas

Thermus thermophilus V/A-ATPase, conformation 2


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
MSCOP2B SuperfamilyV-type ATP synthase subunit C 8040383 3000323 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyAtpF-like 8033711 3000828 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyVAPG-like 8101875 3002722 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyVAPG-like 8101875 3002722 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8018298 3001034 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRecA-like P-loop NTPases 8018301 3002019 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8018298 3001034 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyRecA-like P-loop NTPases 8018301 3002019 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8018298 3001034 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyRecA-like P-loop NTPases 8018301 3002019 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8018290 3001034 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyRecA-like P-loop NTPases 8018285 3002019 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyATP synthase alpha/beta C-terminal domain-like 8056935 3000684 SCOP2B (2022-06-29)
CSCOP2B SuperfamilySingle hybrid motif 8018293 3001880 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRecA-like P-loop NTPases 8018285 3002019 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyATP synthase alpha/beta C-terminal domain-like 8056935 3000684 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8018290 3001034 SCOP2B (2022-06-29)
BSCOP2B SuperfamilySingle hybrid motif 8018293 3001880 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyRecA-like P-loop NTPases 8018285 3002019 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyATP synthase alpha/beta C-terminal domain-like 8056935 3000684 SCOP2B (2022-06-29)
ASCOP2B SuperfamilySingle hybrid motif 8018293 3001880 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8018290 3001034 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ZHelicase_Ce5gasZ1 A: a/b three-layered sandwichesX: CXXC domain-likeH: CXXC domainT: CXXC domainF: Helicase_CECOD (v294.1)
YHelicase_Ce5gasY1 A: a/b three-layered sandwichesX: CXXC domain-likeH: CXXC domainT: CXXC domainF: Helicase_CECOD (v294.1)
XHelicase_Ce5gasX1 A: a/b three-layered sandwichesX: CXXC domain-likeH: CXXC domainT: CXXC domainF: Helicase_CECOD (v294.1)
WHelicase_Ce5gasW1 A: a/b three-layered sandwichesX: CXXC domain-likeH: CXXC domainT: CXXC domainF: Helicase_CECOD (v294.1)
VHelicase_Ce5gasV1 A: a/b three-layered sandwichesX: CXXC domain-likeH: CXXC domainT: CXXC domainF: Helicase_CECOD (v294.1)
UHelicase_Ce5gasU1 A: a/b three-layered sandwichesX: CXXC domain-likeH: CXXC domainT: CXXC domainF: Helicase_CECOD (v294.1)
THelicase_Ce5gasT1 A: a/b three-layered sandwichesX: CXXC domain-likeH: CXXC domainT: CXXC domainF: Helicase_CECOD (v294.1)
SHelicase_Ce5gasS1 A: a/b three-layered sandwichesX: CXXC domain-likeH: CXXC domainT: CXXC domainF: Helicase_CECOD (v294.1)
RHelicase_Ce5gasR1 A: a/b three-layered sandwichesX: CXXC domain-likeH: CXXC domainT: CXXC domainF: Helicase_CECOD (v294.1)
QHelicase_Ce5gasQ1 A: a/b three-layered sandwichesX: CXXC domain-likeH: CXXC domainT: CXXC domainF: Helicase_CECOD (v294.1)
PHelicase_Ce5gasP1 A: a/b three-layered sandwichesX: CXXC domain-likeH: CXXC domainT: CXXC domainF: Helicase_CECOD (v294.1)
OHelicase_Ce5gasO1 A: a/b three-layered sandwichesX: CXXC domain-likeH: CXXC domainT: CXXC domainF: Helicase_CECOD (v294.1)
NUshere5gasN2 A: a/b three-layered sandwichesX: Inserted helical domain in fatty acid synthase subunit betaH: Voltage-gated ion channelsT: Voltage-gated ion channelsF: UsherECOD (v294.1)
Mubiquitine5gasM1 A: a/b three-layered sandwichesX: HTHH: SH3T: SH3F: ubiquitinECOD (v294.1)
Lubiquitine5gasL1 A: a/b three-layered sandwichesX: HTHH: SH3T: SH3F: ubiquitinECOD (v294.1)
Kubiquitine5gasK1 A: a/b three-layered sandwichesX: HTHH: SH3T: SH3F: ubiquitinECOD (v294.1)
JGST_N_2e5gasJ1 A: a/b three-layered sandwichesX: HTHH: Baseplate wedge protein gp6 helical domainT: Baseplate wedge protein gp6 helical domainF: GST_N_2ECOD (v294.1)
IGST_N_2e5gasI1 A: a/b three-layered sandwichesX: HTHH: Baseplate wedge protein gp6 helical domainT: Baseplate wedge protein gp6 helical domainF: GST_N_2ECOD (v294.1)
HGST_N_2e5gasH1 A: a/b three-layered sandwichesX: HTHH: Baseplate wedge protein gp6 helical domainT: Baseplate wedge protein gp6 helical domainF: GST_N_2ECOD (v294.1)
GGST_N_2e5gasG1 A: a/b three-layered sandwichesX: HTHH: Baseplate wedge protein gp6 helical domainT: Baseplate wedge protein gp6 helical domainF: GST_N_2ECOD (v294.1)
FGST_N_2e5gasF1 A: a/b three-layered sandwichesX: HTHH: Baseplate wedge protein gp6 helical domainT: Baseplate wedge protein gp6 helical domainF: GST_N_2ECOD (v294.1)
EGST_N_2e5gasE1 A: a/b three-layered sandwichesX: HTHH: Baseplate wedge protein gp6 helical domainT: Baseplate wedge protein gp6 helical domainF: GST_N_2ECOD (v294.1)
DGST_N_2e5gasD1 A: a/b three-layered sandwichesX: HTHH: Baseplate wedge protein gp6 helical domainT: Baseplate wedge protein gp6 helical domainF: GST_N_2ECOD (v294.1)
CATP-synt_VA_Ce5gasC1 A: a/b three-layered sandwichesX: Transmembrane heme-binding four-helical bundleH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ATP-synt_VA_CECOD (v294.1)
BATP-synt_VA_Ce5gasB1 A: a/b three-layered sandwichesX: Transmembrane heme-binding four-helical bundleH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ATP-synt_VA_CECOD (v294.1)
AATP-synt_VA_Ce5gasA1 A: a/b three-layered sandwichesX: Transmembrane heme-binding four-helical bundleH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ATP-synt_VA_CECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
O, P, Q, R, S
PF00137ATP synthase subunit C (ATP-synt_C)ATP synthase subunit CThis domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4]. Domain
PF01992ATP synthase (C/AC39) subunit (vATP-synt_AC39)ATP synthase (C/AC39) subunit- Family
PF01990ATP synthase (F/14-kDa) subunit (ATP-synt_F)ATP synthase (F/14-kDa) subunit- Family
PF01813ATP synthase subunit D (ATP-synt_D)ATP synthase subunit D- Family
G, H
PF01991ATP synthase (E/31 kDa) subunit (vATP-synt_E)ATP synthase (E/31 kDa) subunit- Family
D, E, F
PF00006ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab)ATP synthase alpha/beta family, nucleotide-binding domainThis entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. Domain
D, E, F
PF22919C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C)C-terminal domain of V and A type ATP synthaseThis entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases. Domain
D, E, F
PF02874ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N)ATP synthase alpha/beta family, beta-barrel domainThis family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. Domain
A, B, C
PF00006ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab)ATP synthase alpha/beta family, nucleotide-binding domainThis entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. Domain
A, B, C
PF22919C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C)C-terminal domain of V and A type ATP synthaseThis entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases. Domain
A, B, C
PF16886ATPsynthase alpha/beta subunit barrel-sandwich domain (ATP-synt_ab_Xtn)ATPsynthase alpha/beta subunit barrel-sandwich domainThis barrel-sandwich domain is found in the alpha-beta catalytic subunit of VATA or V-type proton ATPase catalytic subunit at the N-terminal end. This domain has a circularly permuted topology compared to other barrel-sandwich domains. In VATA barrel ...This barrel-sandwich domain is found in the alpha-beta catalytic subunit of VATA or V-type proton ATPase catalytic subunit at the N-terminal end. This domain has a circularly permuted topology compared to other barrel-sandwich domains. In VATA barrel-sandwich domain the C-terminal strand is circularly permuted and occupies the spatial position of the N-terminal strand in other hybrid domains.
Domain
A, B, C
PF02874ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N)ATP synthase alpha/beta family, beta-barrel domainThis family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
O, P, Q, R, S
Vacuolar type ATP synthase subunit -
Archaeal/vacuolar-type H+-ATPase subunit I
V-type ATP synthase subunit C
V-type ATP synthase subunit F -
V-type ATP synthase subunit D -
I, J
V-type ATPase subunit G - -
G, H
V-type ATP synthase subunit E
D, E, F
V-type ATP synthase beta chain -
A, B, C
V-type ATP synthase alpha chain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
O, P, Q, R, S
IPR035921F/V-ATP synthase subunit C superfamilyHomologous Superfamily
O, P, Q, R, S
IPR000245V-ATPase proteolipid subunitFamily
O, P, Q, R, S
IPR002379V-ATPase proteolipid subunit C-like domainDomain
IPR040574V-type ATP synthase subunit I, N-terminalDomain
IPR002490V-type ATPase, V0 complex, 116kDa subunit familyFamily
IPR041276Vacuolar ATPase subunit I, N-terminal proximal lobeDomain
IPR044911V-type ATP synthase C/D subunit, domain 3 superfamilyHomologous Superfamily
IPR002843ATPase, V0 complex, C/D subunitFamily
IPR014272ATPase, V0 complex, C subunitFamily
IPR050873V-ATPase V0D/AC39 subunitFamily
IPR036079V-type ATP synthase subunit C/D subunit superfamilyHomologous Superfamily
IPR035067V-type ATPase subunit C/DHomologous Superfamily
IPR022944ATPase, V1 complex, subunit F, bacterial/archaealFamily
IPR036906ATPase, V1 complex, subunit F superfamilyHomologous Superfamily
IPR008218ATPase, V1 complex, subunit FFamily
IPR002699ATPase, V1 complex, subunit DFamily
G, H
IPR002842V-type ATPase subunit EFamily
G, H
IPR038495V-type ATPase subunit E, C-terminal domain superfamilyHomologous Superfamily
D, E, F
IPR020003ATPase, alpha/beta subunit, nucleotide-binding domain, active siteActive Site
D, E, F
IPR000194ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainDomain
D, E, F
IPR055190ATP synthase A/B type, C-terminal domainDomain
D, E, F
IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainDomain
D, E, F
IPR022879V-type ATP synthase regulatory subunit B/betaFamily
D, E, F
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A, B, C
IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainDomain
A, B, C
IPR022878V-type ATP synthase catalytic alpha chainFamily
A, B, C
IPR024034ATPase, F1/V1 complex, beta/alpha subunit, C-terminalHomologous Superfamily
A, B, C
IPR036121ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamilyHomologous Superfamily
A, B, C
IPR031686ATPsynthase alpha/beta subunit, barrel-sandwich domainDomain
A, B, C
IPR023366ATP synthase subunit alpha, N-terminal domain-like superfamilyHomologous Superfamily
A, B, C
IPR020003ATPase, alpha/beta subunit, nucleotide-binding domain, active siteActive Site
A, B, C
IPR000194ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainDomain
A, B, C
IPR055190ATP synthase A/B type, C-terminal domainDomain
A, B, C
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
N, O, P, Q, R
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

ChainsExternal LinkComment
N, O, P, Q, R
MemProtMDAnnotated as membrane protein by MemProtMD