5FUG
Crystal structure of a human YL1-H2A.Z-H2B complex
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Core histone-like | 8036779 | 3001387 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Core histone-like | 8036779 | 3001387 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Core histone-like | 8036779 | 3001387 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Core histone-like | 8036779 | 3001387 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | YL1-Z domain-like | 8093147 | 3002684 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | YL1-Z domain-like | 8093147 | 3002684 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | YL1-Z domain-like | 8093147 | 3002684 | SCOP2B (2022-06-29) |
L | SCOP2 Family | YL1-Z domain-like | 8047553 | 4005691 | SCOP2 (2022-06-29) |
L | SCOP2 Superfamily | YL1-Z domain-like | 8093147 | 3002684 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00125 | e5fugA1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
D | PF00125 | e5fugD1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
G | PF00125 | e5fugG1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
J | PF00125 | e5fugJ1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
B | PF00125 | e5fugB1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
E | PF00125 | e5fugE1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
H | PF00125 | e5fugH1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
K | PF00125 | e5fugK1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.20.10 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | Histone, subunit A | CATH (4.3.0) |
D | 1.10.20.10 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | Histone, subunit A | CATH (4.3.0) |
G | 1.10.20.10 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | Histone, subunit A | CATH (4.3.0) |
J | 1.10.20.10 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | Histone, subunit A | CATH (4.3.0) |
B | 1.10.20.10 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | Histone, subunit A | CATH (4.3.0) |
E | 1.10.20.10 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | Histone, subunit A | CATH (4.3.0) |
H | 1.10.20.10 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | Histone, subunit A | CATH (4.3.0) |
K | 1.10.20.10 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | Histone, subunit A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF16211 | C-terminus of histone H2A (Histone_H2A_C) | C-terminus of histone H2A | - | Family | |
PF00125 | Core histone H2A/H2B/H3/H4 (Histone) | Core histone H2A/H2B/H3/H4 | - | Domain | |
PF00125 | Core histone H2A/H2B/H3/H4 (Histone) | Core histone H2A/H2B/H3/H4 | - | Domain | |
PF05764 | YL1 nuclear protein (YL1) | YL1 nuclear protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR009072 | Histone-fold | Homologous Superfamily | |
IPR007125 | Histone H2A/H2B/H3 | Domain | |
IPR002119 | Histone H2A | Family | |
IPR032454 | Histone H2A, C-terminal domain | Domain | |
IPR032458 | Histone H2A conserved site | Conserved Site | |
IPR009072 | Histone-fold | Homologous Superfamily | |
IPR007125 | Histone H2A/H2B/H3 | Domain | |
IPR000558 | Histone H2B | Family | |
IPR013272 | Vps72/YL1, C-terminal | Domain | |
IPR046757 | Vps72/YL1, N-terminal | Domain | |
IPR008895 | Vps72/YL1 family | Family |