5FRR | pdb_00005frr

Structure of the Pds5-Scc1 complex and implications for cohesin function

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	ubiquitin	e5frrB1	A: a/b three-layered sandwiches	X: HTH	H: SH3	T: SH3	F: ubiquitin	ECOD (v294.1)
A	ubiquitin	e5frrA1	A: a/b three-layered sandwiches	X: HTH	H: SH3	T: SH3	F: ubiquitin	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF20168	Sister chromatid cohesion protein PDS5 protein (PDS5)	Sister chromatid cohesion protein PDS5 protein	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	SISTER CHROMATID COHESION PROTEIN PDS5	cohesin unloader activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid catalytic activity structural molecule activity	sexual reproduction reproductive process meiotic cell cycle primary metabolic process DNA metabolic process meiotic cell cycle process nucleic acid metabolic process nucleobase-containing compound metabolic process meiotic DNA double-strand break formation meiosis I cell cycle process cellular process metabolic process cell cycle macromolecule metabolic process sexual reproduction reproductive process meiotic cell cycle primary metabolic process DNA metabolic process meiotic cell cycle process nucleic acid metabolic process nucleobase-containing compound metabolic process meiotic DNA double-strand break formation meiosis I cell cycle process cellular process metabolic process cell cycle macromolecule metabolic process cell cycle process cellular component organization chromatin looping chromatin organization cellular component organization or biogenesis cell division organelle organization mitotic sister chromatid cohesion chromosome organization sister chromatid cohesion meiotic chromosome segregation synaptonemal complex assembly cellular component biogenesis cellular component assembly meiosis I meiotic nuclear division synaptonemal complex organization chromosome segregation organelle fission chromosome organization involved in meiotic cell cycle nuclear division homologous chromosome pairing at meiosis nuclear chromosome segregation homologous chromosome segregation mitotic nuclear division mitotic chromosome condensation sister chromatid segregation mitotic cell cycle mitotic cell cycle process chromosome condensation mitotic sister chromatid segregation cellular response to stimulus double-strand break repair response to stimulus cellular response to stress DNA damage response response to stress DNA repair	membrane-bounded organelle condensed nuclear chromosome intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle nuclear chromosome chromosome intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membrane-bounded organelle condensed nuclear chromosome intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle nuclear chromosome chromosome intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle condensed chromosome nuclear lumen cytoplasm cytosol chromatin protein-containing complex meiotic recombination initiation complex nuclear protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR016024	Armadillo-type fold	Homologous Superfamily
A, B	IPR011989	Armadillo-like helical	Homologous Superfamily
A, B	IPR039776	Sister chromatid cohesion protein Pds5	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.