5FDN | pdb_00005fdn

Crystal structure of phosphoenolpyruvate carboxylase from Arabidopsis thaliana in complex with aspartate and citrate

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2 Family	Phosphoenolpyruvate carboxylase	8069958	4003266	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Phosphoenolpyruvate/pyruvate domain	8069959	3000510	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	Phosphoenolpyruvate/pyruvate domain	8069959	3000510	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	PEPcase	e5fdnB1	A: a/b three-layered sandwiches	X: Mog1p/PsbP-like	H: EGF-related	T: TNF receptor-like	F: PEPcase	ECOD (v294.1)
A	PEPcase	e5fdnA1	A: a/b three-layered sandwiches	X: Mog1p/PsbP-like	H: EGF-related	T: TNF receptor-like	F: PEPcase	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00311	Phosphoenolpyruvate carboxylase (PEPcase)	Phosphoenolpyruvate carboxylase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Phosphoenolpyruvate carboxylase 3	phosphoenolpyruvate carboxylase activity phosphoenolpyruvate carboxykinase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity	aerobic respiration cellular respiration tricarboxylic acid cycle energy derivation by oxidation of organic compounds primary metabolic process metabolic process cellular process generation of precursor metabolites and energy photosynthesis carbon fixation developmental process multicellular organism development multicellular organismal process plant organ development aerobic respiration cellular respiration tricarboxylic acid cycle energy derivation by oxidation of organic compounds primary metabolic process metabolic process cellular process generation of precursor metabolites and energy photosynthesis carbon fixation developmental process multicellular organism development multicellular organismal process plant organ development anatomical structure development leaf development shoot system development phyllome development system development	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR015813	Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily	Homologous Superfamily
A, B	IPR033129	Phosphoenolpyruvate carboxylase, His active site	Active Site
A, B	IPR018129	Phosphoenolpyruvate carboxylase, Lys active site	Active Site
A, B	IPR021135	Phosphoenolpyruvate carboxylase	Family
A, B	IPR022805	Phosphoenolpyruvate carboxylase, bacterial/plant-type	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.