Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
F [auth D]SCOP2B SuperfamilyUbiquitin-like 8101457 3000157 SCOP2B (2022-06-29)
E [auth C]SCOP2B SuperfamilyUbiquitin-like 8101457 3000157 SCOP2B (2022-06-29)
D [auth B]SCOP2B SuperfamilyUBC-like 8034195 3000570 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyUBC-like 8034195 3000570 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
F [auth D]ubiquitin_1e5eyaD1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_1ECOD (1.6)
E [auth C]ubiquitin_1e5eyaC1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_1ECOD (1.6)
C [auth G]zf-C3HC4_4e5eyaG1 A: few secondary structure elementsX: RING/U-box-likeH: RING/U-box-likeT: RING/U-boxF: zf-C3HC4_4ECOD (1.6)
B [auth F]zf-C3HC4_4e5eyaF1 A: few secondary structure elementsX: RING/U-box-likeH: RING/U-box-likeT: RING/U-boxF: zf-C3HC4_4ECOD (1.6)
D [auth B]UQ_cone5eyaB1 A: a+b two layersX: UBC-likeH: UBC-like (From Topology)T: UBC-likeF: UQ_conECOD (1.6)
AUQ_cone5eyaA1 A: a+b two layersX: UBC-likeH: UBC-like (From Topology)T: UBC-likeF: UQ_conECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C [auth G]3.30.40.10 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Zinc/RING finger domain, C3HC4 (zinc finger)CATH (4.3.0)
B [auth F]3.30.40.10 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Zinc/RING finger domain, C3HC4 (zinc finger)CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
E [auth C],
F [auth D]
PF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain
B [auth F],
C [auth G]
PF13445RING-type zinc-finger (zf-RING_UBOX)RING-type zinc-fingerThis zinc-finger is a typical RING-type of plant ubiquitin ligases [1]. Domain
A,
D [auth B]
PF00179Ubiquitin-conjugating enzyme (UQ_con)Ubiquitin-conjugating enzymeProteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cystein ...Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine [4, 5].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
E [auth C],
F [auth D]
Polyubiquitin-B
B [auth F],
C [auth G]
Tripartite motif-containing 25 variant
A,
D [auth B]
Ubiquitin-conjugating enzyme E2 N

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
E [auth C],
F [auth D]
IPR019954Ubiquitin conserved siteConserved Site
E [auth C],
F [auth D]
IPR050158Ubiquitin and ubiquitin-likeFamily
E [auth C],
F [auth D]
IPR000626Ubiquitin-like domainDomain
E [auth C],
F [auth D]
IPR019956Ubiquitin domainDomain
E [auth C],
F [auth D]
IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
B [auth F],
C [auth G]
IPR051051E3 ubiquitin-protein ligase TRIM/RNFFamily
B [auth F],
C [auth G]
IPR006574SPRY-associatedDomain
B [auth F],
C [auth G]
IPR013320Concanavalin A-like lectin/glucanase domain superfamilyHomologous Superfamily
B [auth F],
C [auth G]
IPR043136B30.2/SPRY domain superfamilyHomologous Superfamily
B [auth F],
C [auth G]
IPR042753TRIM25, PRY/SPRY domainDomain
B [auth F],
C [auth G]
IPR003877SPRY domainDomain
B [auth F],
C [auth G]
IPR017907Zinc finger, RING-type, conserved siteConserved Site
B [auth F],
C [auth G]
IPR001870B30.2/SPRY domainDomain
B [auth F],
C [auth G]
IPR027370Zinc finger, RING-type, eukaryoticDomain
B [auth F],
C [auth G]
IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
B [auth F],
C [auth G]
IPR003879Butyrophylin-like, SPRY domainDomain
B [auth F],
C [auth G]
IPR058030TRIM8/14/16/25/29/45/65, coiled-coil regionDomain
B [auth F],
C [auth G]
IPR001841Zinc finger, RING-typeDomain
A,
D [auth B]
IPR016135Ubiquitin-conjugating enzyme/RWD-likeHomologous Superfamily
A,
D [auth B]
IPR000608Ubiquitin-conjugating (UBC), catalytic core domainDomain
A,
D [auth B]
IPR023313Ubiquitin-conjugating enzyme, active siteActive Site