5ELM | pdb_00005elm

Crystal structure of L-aspartate/glutamate specific racemase in complex with L-glutamate

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d5elmd1	Alpha and beta proteins (a/b)	ATC-like	Aspartate/glutamate racemase	automated matches	automated matches	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
D	d5elmd3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
C	d5elmc1	Alpha and beta proteins (a/b)	ATC-like	Aspartate/glutamate racemase	automated matches	automated matches	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
C	d5elmc3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
B	d5elmb1	Alpha and beta proteins (a/b)	ATC-like	Aspartate/glutamate racemase	automated matches	automated matches	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
B	d5elmb3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
A	d5elma1	Alpha and beta proteins (a/b)	ATC-like	Aspartate/glutamate racemase	automated matches	automated matches	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
A	d5elma3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Asp_Glu_race_C	e5elmD1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: ATC-like	F: Asp_Glu_race_C	ECOD (1.6)
D	Asp_Glu_race_N	e5elmD2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: ATC-like	F: Asp_Glu_race_N	ECOD (1.6)
C	Asp_Glu_race_C	e5elmC2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: ATC-like	F: Asp_Glu_race_C	ECOD (1.6)
C	Asp_Glu_race_N	e5elmC1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: ATC-like	F: Asp_Glu_race_N	ECOD (1.6)
B	Asp_Glu_race_C	e5elmB2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: ATC-like	F: Asp_Glu_race_C	ECOD (1.6)
B	Asp_Glu_race_N	e5elmB1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: ATC-like	F: Asp_Glu_race_N	ECOD (1.6)
A	Asp_Glu_race_C	e5elmA2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: ATC-like	F: Asp_Glu_race_C	ECOD (1.6)
A	Asp_Glu_race_N	e5elmA1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: ATC-like	F: Asp_Glu_race_N	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.40.50.1860	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.2.0)
C	3.40.50.1860	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.2.0)
B	3.40.50.1860	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.2.0)
A	3.40.50.1860	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.2.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Asp/Glu_racemase family protein	isomerase activity racemase and epimerase activity racemase and epimerase activity, acting on amino acids and derivatives amino-acid racemase activity catalytic activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR033134	Asp/Glu racemase, active site 2	Active Site
A, B, C, D	IPR018187	Asp/Glu racemase, active site 1	Active Site
A, B, C, D	IPR001920	Asp/Glu racemase	Homologous Superfamily
A, B, C, D	IPR004380	Aspartate racemase	Family
A, B, C, D	IPR015942	Asp/Glu/hydantoin racemase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.