5DR5 | pdb_00005dr5

Crystal structure of the sclerostin-neutralizing Fab AbD09097


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
B [auth L]d5dr5l1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth L]Peripla_BP_4e5dr5L1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Peripla_BP_4ECOD (v294.1)
A [auth H]Peripla_BP_4e5dr5H1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Peripla_BP_4ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B [auth L]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
A [auth H]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
B [auth L]AbD09097 Fab L-KAPPA Homo sapiens (human) IGKV3D-11*02, IGKV3D-11*03, IGKJ1*01, IGKC*01 V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA IG FAB-GAMMA-1_KAPPA IMGT (202613-0)
A [auth H]AbD09097 Fab VH-CH1 Homo sapiens (human) IGHV3-NL1*01, IGHJ1*01, IGHG1*01, IGHG1*02, IGHG1*04, IGHG1*05 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-1_KAPPA IMGT (202613-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
B [auth L]Light ChainIGKV3D Kappa-SAbDab (2026-04-10)
A [auth H]Heavy ChainIGHV3 --SAbDab (2026-04-10)