Annotations: 5DNK

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2 Family	PKMT methyltransferase domain-like	8051525	4007420	SCOP2 (2022-06-29)
B	SCOP2 Family	PqqD-like	8090239	4005476	SCOP2 (2022-06-29)
B	SCOP2 Family	PqqD-like	8090240	4005476	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8090236	3000118	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Winged helix DNA-binding domain	8090244	3000034	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Winged helix DNA-binding domain	8090245	3000034	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	Winged helix DNA-binding domain	8090244	3000034	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8090236	3000118	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Winged helix DNA-binding domain	8090245	3000034	SCOP2B (2022-06-29)

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	CDC48_N	e5dnkB1	A: a/b three-layered sandwiches	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: CDC48_N	ECOD (v294.1)
A	CDC48_N	e5dnkA1	A: a/b three-layered sandwiches	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: CDC48_N	ECOD (v294.1)

Chains	Accession	Name	Description	Comments	Source
A, B	PF21782	PKMT, C-terminal winged helix domain (WHD_PKMT)	PKMT, C-terminal winged helix domain	This entry represents the C-terminal winged helix domain of PKMTs. PKMTs are protein-lysine methyltransferases that catalyze the methylation of lysine residues on many different proteins. They consist of N-terminal S-adenosylmethionine binding domain ...	This entry represents the C-terminal winged helix domain of PKMTs. PKMTs are protein-lysine methyltransferases that catalyze the methylation of lysine residues on many different proteins. They consist of N-terminal S-adenosylmethionine binding domain, a middle domain and a C-terminal domain. The middle and the C-terminal domain share significant structural similarity and are both distantly related to HTH winged helix DNA-binding domains [1].	Domain
A, B	PF13847	Methyltransferase domain (Methyltransf_31)	Methyltransferase domain	This family appears to have methyltransferase activity.	Domain
A, B	PF10119	Predicted methyltransferase regulatory domain (MethyTransf_Reg)	Predicted methyltransferase regulatory domain	-	Family

Chains	Accession	Name	Type
A, B	IPR025714	Methyltransferase domain	Domain
A, B	IPR048976	PKMT, C-terminal winged helix domain	Domain
A, B	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Homologous Superfamily
A, B	IPR018773	Methyltransferase regulatory domain, predicted	Domain
A, B	IPR050723	Cyclopropane Fatty Acid Synthase/Methyltransferase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

5DNK | pdb_00005dnk