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 5DNK | pdb_00005dnk

The structure of PKMT1 from Rickettsia prowazekii in complex with AdoHcy

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2 FamilyPKMT methyltransferase domain-like 8051525 4007420 SCOP2 (2022-06-29)
BSCOP2 FamilyPqqD-like 8090239 4005476 SCOP2 (2022-06-29)
BSCOP2 FamilyPqqD-like 8090240 4005476 SCOP2 (2022-06-29)
BSCOP2 SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases 8090236 3000118 SCOP2 (2022-06-29)
BSCOP2 SuperfamilyWinged helix DNA-binding domain 8090244 3000034 SCOP2 (2022-06-29)
BSCOP2 SuperfamilyWinged helix DNA-binding domain 8090245 3000034 SCOP2 (2022-06-29)
ASCOP2B SuperfamilyWinged helix DNA-binding domain 8090244 3000034 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases 8090236 3000118 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyWinged helix DNA-binding domain 8090245 3000034 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BtRNA_anti-codone5dnkB1 A: alpha arraysX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: tRNA_anti-codonECOD (v295.2)
AtRNA_anti-codone5dnkA1 A: alpha arraysX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: tRNA_anti-codonECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF21782PKMT, C-terminal winged helix domain (WHD_PKMT)PKMT, C-terminal winged helix domainThis entry represents the C-terminal winged helix domain of PKMTs. PKMTs are protein-lysine methyltransferases that catalyze the methylation of lysine residues on many different proteins. They consist of N-terminal S-adenosylmethionine binding domain ...This entry represents the C-terminal winged helix domain of PKMTs. PKMTs are protein-lysine methyltransferases that catalyze the methylation of lysine residues on many different proteins. They consist of N-terminal S-adenosylmethionine binding domain, a middle domain and a C-terminal domain. The middle and the C-terminal domain share significant structural similarity and are both distantly related to HTH winged helix DNA-binding domains [1].
Domain
A, B
PF13847Methyltransferase domain (Methyltransf_31)Methyltransferase domainThis family appears to have methyltransferase activity. Domain
A, B
PF10119Predicted methyltransferase regulatory domain (MethyTransf_Reg)Predicted methyltransferase regulatory domain- Family

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR025714Methyltransferase domainDomain
A, B
IPR048976PKMT, C-terminal winged helix domainDomain
A, B
IPR050723Cyclopropane fatty acid synthase/mycolic acid synthase MmaA1-3-likeFamily
A, B
IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
A, B
IPR018773Methyltransferase regulatory domain, predictedDomain