5DNI | pdb_00005dni

Crystal structure of Methanocaldococcus jannaschii Fumarate hydratase beta subunit

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	FumA C-terminal domain-like	8063854	3000697	SCOP2B (2022-06-29)
A	SCOP2 Family	FumA C-terminal domain-like	8063853	4003363	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	FumA C-terminal domain-like	8063854	3000697	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Fumerase_C	e5dniB1	A: a/b three-layered sandwiches	X: The swivelling beta/beta/alpha domains	H: FumA C-terminal domain-like (From Topology)	T: FumA C-terminal domain-like	F: Fumerase_C	ECOD (1.6)
A	Fumerase_C	e5dniA1	A: a/b three-layered sandwiches	X: The swivelling beta/beta/alpha domains	H: FumA C-terminal domain-like (From Topology)	T: FumA C-terminal domain-like	F: Fumerase_C	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.20.130.10	Alpha Beta	Alpha-Beta Barrel	fumarase	Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain	CATH (4.2.0)
A	3.20.130.10	Alpha Beta	Alpha-Beta Barrel	fumarase	Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain	CATH (4.2.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF05683	Fumarase C-terminus (Fumerase_C)	Fumarase C-terminus	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Putative L(+)-tartrate dehydratase subunit beta	hydro-lyase activity lyase activity catalytic activity L(+)-tartrate dehydratase activity carbon-oxygen lyase activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR004647	Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain	Domain
A, B	IPR036660	Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.