5DNI | pdb_00005dni

Crystal structure of Methanocaldococcus jannaschii Fumarate hydratase beta subunit

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	FumA C-terminal domain-like	8063854	3000697	SCOP2B (2022-06-29)
A	SCOP2 Family	FumA C-terminal domain-like	8063853	4003363	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	FumA C-terminal domain-like	8063854	3000697	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Pyridoxal_deC	e5dniB1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: Pyridoxal_deC	ECOD (v294.1)
A	Pyridoxal_deC	e5dniA1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: Pyridoxal_deC	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.20.130.10	Alpha Beta	Alpha-Beta Barrel	fumarase	Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain	CATH (4.3.0)
A	3.20.130.10	Alpha Beta	Alpha-Beta Barrel	fumarase	Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF05683	Fumarase C-terminus (Fumerase_C)	Fumarase C-terminus	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Putative L(+)-tartrate dehydratase subunit beta	hydro-lyase activity lyase activity catalytic activity L(+)-tartrate dehydratase activity carbon-oxygen lyase activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR004647	Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain	Domain
A, B	IPR036660	Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.