5DHM | pdb_00005dhm

Crystal structure of the fimbrial protein Mfa4 from Porphyromonas gingivalis

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2 Family	Major fimbrial protein FimA-like	8048037	4005929	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	FimA/Mfa2-like	8102571	3002736	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	FimA/Mfa2-like	8102564	3002736	SCOP2 (2022-06-29)
B [auth C]	SCOP2B Superfamily	FimA/Mfa2-like	8102571	3002736	SCOP2B (2022-06-29)
B [auth C]	SCOP2B Superfamily	FimA/Mfa2-like	8102564	3002736	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth B]	EUF07740	e5dhmB2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Prealbumin-like	F: EUF07740	ECOD (1.6)
C [auth B]	P_gingi_FimA_like_1	e5dhmB1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Prealbumin-like	F: P_gingi_FimA_like_1	ECOD (1.6)
A	EUF07740	e5dhmA2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Prealbumin-like	F: EUF07740	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.60.40.2580	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
B [auth C]	2.60.40.2580	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth C], D	Immunoreactive 32 kDa antigen	-	-	pilus cell projection cellular anatomical structure cell periphery cell outer membrane external encapsulating structure membrane cell envelope outer membrane
A, C [auth B]	Immunoreactive 32 kDa antigen	-	-	pilus cell projection cellular anatomical structure cell periphery cell outer membrane external encapsulating structure membrane cell envelope outer membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth C], D	IPR054771	Minor fimbrium tip subunit MfA4, C-terminal	Domain
B [auth C], D	IPR029141	Major fimbrial subunit protein, N-terminal	Domain
A, C [auth B]	IPR054771	Minor fimbrium tip subunit MfA4, C-terminal	Domain
A, C [auth B]	IPR029141	Major fimbrial subunit protein, N-terminal	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.