5DA8 | pdb_00005da8

Crystal structure of chaperonin GroEL from

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z	PID	e5da8Z1	A: a/b three-layered sandwiches	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: PID	ECOD (v294.1)
Y	PID	e5da8Y1	A: a/b three-layered sandwiches	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: PID	ECOD (v294.1)
X	PID	e5da8X1	A: a/b three-layered sandwiches	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: PID	ECOD (v294.1)
W	PID	e5da8W1	A: a/b three-layered sandwiches	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: PID	ECOD (v294.1)
V	PID	e5da8V1	A: a/b three-layered sandwiches	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: PID	ECOD (v294.1)
U	PID	e5da8U1	A: a/b three-layered sandwiches	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: PID	ECOD (v294.1)
T	PID	e5da8T1	A: a/b three-layered sandwiches	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: PID	ECOD (v294.1)
S	PID	e5da8S1	A: a/b three-layered sandwiches	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: PID	ECOD (v294.1)
R	PID	e5da8R1	A: a/b three-layered sandwiches	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: PID	ECOD (v294.1)
Q	PID	e5da8Q1	A: a/b three-layered sandwiches	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: PID	ECOD (v294.1)
P	PID	e5da8P1	A: a/b three-layered sandwiches	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: PID	ECOD (v294.1)
O	PID	e5da8O1	A: a/b three-layered sandwiches	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: PID	ECOD (v294.1)
N	PID	e5da8N1	A: a/b three-layered sandwiches	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: PID	ECOD (v294.1)
M	PID	e5da8M1	A: a/b three-layered sandwiches	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: PID	ECOD (v294.1)
L	PID	e5da8L1	A: a/b three-layered sandwiches	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: PID	ECOD (v294.1)
K	TM_ErbB1	e5da8K1	A: a/b three-layered sandwiches	X: C-terminal additional helical subdomain in reovirus polymerase lambda3	H: C-terminal additional helical subdomain in reovirus polymerase lambda3	T: C-terminal additional helical subdomain in reovirus polymerase lambda3	F: TM_ErbB1	ECOD (v294.1)
J	PID	e5da8J1	A: a/b three-layered sandwiches	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: PID	ECOD (v294.1)
I	PID	e5da8I1	A: a/b three-layered sandwiches	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: PID	ECOD (v294.1)
H	TM_ErbB1	e5da8H1	A: a/b three-layered sandwiches	X: C-terminal additional helical subdomain in reovirus polymerase lambda3	H: C-terminal additional helical subdomain in reovirus polymerase lambda3	T: C-terminal additional helical subdomain in reovirus polymerase lambda3	F: TM_ErbB1	ECOD (v294.1)
G	PID	e5da8G1	A: a/b three-layered sandwiches	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: PID	ECOD (v294.1)
F	PID	e5da8F1	A: a/b three-layered sandwiches	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: PID	ECOD (v294.1)
E	PID	e5da8E1	A: a/b three-layered sandwiches	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: PID	ECOD (v294.1)
D	PID	e5da8D1	A: a/b three-layered sandwiches	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: PID	ECOD (v294.1)
C	PID	e5da8C1	A: a/b three-layered sandwiches	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: PID	ECOD (v294.1)
BA [auth b]	PID	e5da8b1	A: a/b three-layered sandwiches	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: PID	ECOD (v294.1)
B	PID	e5da8B1	A: a/b three-layered sandwiches	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: PID	ECOD (v294.1)
AA [auth a]	PID	e5da8a1	A: a/b three-layered sandwiches	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: PID	ECOD (v294.1)
A	PID	e5da8A1	A: a/b three-layered sandwiches	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: PID	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
Z	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
Z	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
Y	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
Y	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
X	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
X	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
W	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
W	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
V	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
V	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
U	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
U	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
T	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
T	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
S	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
S	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
R	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
R	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
Q	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
Q	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
P	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
P	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
O	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
O	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
N	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
N	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
M	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
M	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
L	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
L	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
K	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
K	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
J	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
J	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
J	3.50.7.10	Alpha Beta	3-Layer(bba) Sandwich	GroEL	GroEL	CATH (4.3.0)
I	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
I	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
I	3.50.7.10	Alpha Beta	3-Layer(bba) Sandwich	GroEL	GroEL	CATH (4.3.0)
H	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
H	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
G	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
G	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
G	3.50.7.10	Alpha Beta	3-Layer(bba) Sandwich	GroEL	GroEL	CATH (4.3.0)
F	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
F	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
E	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
E	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
D	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
D	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
C	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
C	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
BA [auth b]	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
BA [auth b]	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
B	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
B	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
AA [auth a]	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
AA [auth a]	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
A	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
A	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	PF00118	TCP-1/cpn60 chaperonin family (Cpn60_TCP1)	TCP-1/cpn60 chaperonin family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	60 kDa chaperonin	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding isomerase activity catalytic activity unfolded protein binding protein binding ATP-dependent protein folding chaperone protein folding chaperone ATP-dependent activity	protein refolding primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein folding biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	IPR027413	GroEL-like equatorial domain superfamily	Homologous Superfamily
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	IPR018370	Chaperonin Cpn60, conserved site	Conserved Site
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	IPR027410	TCP-1-like chaperonin intermediate domain superfamily	Homologous Superfamily
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	IPR001844	Chaperonin Cpn60/GroEL	Family
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	IPR027409	GroEL-like apical domain superfamily	Homologous Superfamily
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	IPR002423	Chaperonin Cpn60/GroEL/TCP-1 family	Family