5BWE

Benzylsuccinate synthase alpha-beta-gamma complex with bound toluene and fumarate

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	PFL-like	8098209	4003576	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PFL-like glycyl radical enzymes	8098210	3001069	SCOP2 (2022-06-29)
D	SCOP2B Superfamily	PFL-like glycyl radical enzymes	8098210	3001069	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PFL-like	e5bweA1	A: a/b barrels	X: Ten stranded beta/alpha barrel (From Topology)	H: Ten stranded beta/alpha barrel (From Topology)	T: Ten stranded beta/alpha barrel	F: PFL-like	ECOD (1.6)
A	PFL-like	e5bweA2	A: extended segments	X: Glycyl radical domain (From Topology)	H: Glycyl radical domain (From Topology)	T: Glycyl radical domain	F: PFL-like	ECOD (1.6)
D	PFL-like	e5bweD1	A: a/b barrels	X: Ten stranded beta/alpha barrel (From Topology)	H: Ten stranded beta/alpha barrel (From Topology)	T: Ten stranded beta/alpha barrel	F: PFL-like	ECOD (1.6)
D	PFL-like	e5bweD2	A: extended segments	X: Glycyl radical domain (From Topology)	H: Glycyl radical domain (From Topology)	T: Glycyl radical domain	F: PFL-like	ECOD (1.6)
B	EUF08673	e5bweB1	A: few secondary structure elements	X: HIPIP (high potential iron protein) (From Topology)	H: HIPIP (high potential iron protein) (From Topology)	T: HIPIP (high potential iron protein)	F: EUF08673	ECOD (1.6)
E [auth F]	EUF08673	e5bweF1	A: few secondary structure elements	X: HIPIP (high potential iron protein) (From Topology)	H: HIPIP (high potential iron protein) (From Topology)	T: HIPIP (high potential iron protein)	F: EUF08673	ECOD (1.6)
C	BssC_TutF	e5bweC1	A: few secondary structure elements	X: HIPIP (high potential iron protein) (From Topology)	H: HIPIP (high potential iron protein) (From Topology)	T: HIPIP (high potential iron protein)	F: BssC_TutF	ECOD (1.6)
F [auth G]	BssC_TutF	e5bweG1	A: few secondary structure elements	X: HIPIP (high potential iron protein) (From Topology)	H: HIPIP (high potential iron protein) (From Topology)	T: HIPIP (high potential iron protein)	F: BssC_TutF	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	4.10.490.20	Few Secondary Structures	Irregular	High-Potential Iron-Sulfur Protein	Chain A	CATH (4.3.0)
E [auth F]	4.10.490.20	Few Secondary Structures	Irregular	High-Potential Iron-Sulfur Protein	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, D	PF01228	Glycine radical (Gly_radical)	Glycine radical	-	Domain
A, D	PF02901	Pyruvate formate lyase-like (PFL-like)	Pyruvate formate lyase-like	-	Family
B, E [auth F]	PF18512	Benzylsuccinate synthase beta subunit (BssB_TutG)	Benzylsuccinate synthase beta subunit	Members of this family include benzylsuccinate synthase beta subunit found in bacteria. BssB acts as a regulator of activation and may additionally be involved in regulating access to the enzyme's active site. It adopts a fold similar to that of a hi ...	Members of this family include benzylsuccinate synthase beta subunit found in bacteria. BssB acts as a regulator of activation and may additionally be involved in regulating access to the enzyme's active site. It adopts a fold similar to that of a high potential iron-sulfur protein (HiPIP) and resembles the single small subunit of HPAD, which is known as the HpdC or HPADgamma in that system [1].	Domain
C, F [auth G]	PF08201	BssC/TutF protein (BssC_TutF)	BssC/TutF protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, D	benzylsuccinate synthase alpha chain	lyase activity catalytic activity	-	-
B, E [auth F]	benzylsuccinate synthase beta chain	iron-sulfur cluster binding binding 4 iron, 4 sulfur cluster binding metal cluster binding small molecule binding cation binding ion binding metal ion binding	-	-
C, F [auth G]	benzylsuccinate synthase gamma chain	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, D	IPR004184	Pyruvate formate lyase domain	Domain
A, D	IPR001150	Glycine radical domain	Domain
A, D	IPR019777	Formate C-acetyltransferase glycine radical, conserved site	Conserved Site
B, E [auth F]	IPR040565	Benzylsuccinate synthase beta subunit	Domain
C, F [auth G]	IPR013161	Benzylsuccinate synthase gamma subunit	Family
C, F [auth G]	IPR038640	Benzylsuccinate synthase gamma subunit superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.