5B5B | pdb_00005b5b

Crystal structure of VDR-LBD complexed with 2-methylidene-26,27-diphenyl-19-nor-1,25-dihydroxyvitamin D3


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth D]SCOP2B SuperfamilyNuclear receptor ligand-binding domain 8038686 3001442 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyNuclear receptor ligand-binding domain 8038686 3001442 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth D]Methyltransf_31e5b5bD1 A: a/b three-layered sandwichesX: Spectrin repeat-likeH: EF-hand-relatedT: EF-handF: Methyltransf_31ECOD (v294.1)
AMethyltransf_31e5b5bA1 A: a/b three-layered sandwichesX: Spectrin repeat-likeH: EF-hand-relatedT: EF-handF: Methyltransf_31ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C [auth D]1.10.565.10 Mainly Alpha Orthogonal Bundle Retinoid X Receptor Retinoid X ReceptorCATH (4.3.0)
A1.10.565.10 Mainly Alpha Orthogonal Bundle Retinoid X Receptor Retinoid X ReceptorCATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth C],
D [auth F]
Mediator of RNA polymerase II transcription subunit 1
A,
C [auth D]
Vitamin D3 receptor