Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyMutS domain III-like8056694 3001131 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyMutS domain II-like8056693 3000587 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyABC transporter-like P-loop ATPases8056695 3002020 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyMutS domain II-like8056693 3000587 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyMutS domain III-like8056694 3001131 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyABC transporter-like P-loop ATPases8056695 3002020 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyMutS domain II-like8056693 3000587 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyMutS domain III-like8056694 3001131 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyABC transporter-like P-loop ATPases8056695 3002020 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyABC transporter-like P-loop ATPases8056695 3002020 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyMutS domain II-like8056693 3000587 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyMutS domain III-like8056694 3001131 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyMutS domain III-like8056694 3001131 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyMutS domain II-like8056693 3000587 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyABC transporter-like P-loop ATPases8056695 3002020 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyABC transporter-like P-loop ATPases8056695 3002020 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyMutS domain II-like8056693 3000587 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyMutS domain III-like8056694 3001131 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyGHKL (Gyrase Hsp90 Histidine Kinase MutL) domain-like8036209 3000091 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyRibosomal protein S5 domain 2-like8034438 3000100 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyGHKL (Gyrase Hsp90 Histidine Kinase MutL) domain-like8036209 3000091 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyRibosomal protein S5 domain 2-like8034438 3000100 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyRibosomal protein S5 domain 2-like8034438 3000100 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyGHKL (Gyrase Hsp90 Histidine Kinase MutL) domain-like8036209 3000091 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyGHKL (Gyrase Hsp90 Histidine Kinase MutL) domain-like8036209 3000091 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyRibosomal protein S5 domain 2-like8034438 3000100 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyRibosomal protein S5 domain 2-like8034438 3000100 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyGHKL (Gyrase Hsp90 Histidine Kinase MutL) domain-like8036209 3000091 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyGHKL (Gyrase Hsp90 Histidine Kinase MutL) domain-like8036209 3000091 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyRibosomal protein S5 domain 2-like8034438 3000100 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF05192e5akcA1 A: alpha bundlesX: Four-helical up-and-down bundleH: DNA repair protein MutS, domain III (From Topology)T: DNA repair protein MutS, domain IIIF: PF05192ECOD (1.6)
APF00488e5akcA2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00488ECOD (1.6)
APF05188e5akcA3 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF05188ECOD (1.6)
BPF05192e5akcB1 A: alpha bundlesX: Four-helical up-and-down bundleH: DNA repair protein MutS, domain III (From Topology)T: DNA repair protein MutS, domain IIIF: PF05192ECOD (1.6)
BPF00488e5akcB2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00488ECOD (1.6)
BPF05188e5akcB3 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF05188ECOD (1.6)
EPF05192e5akcE1 A: alpha bundlesX: Four-helical up-and-down bundleH: DNA repair protein MutS, domain III (From Topology)T: DNA repair protein MutS, domain IIIF: PF05192ECOD (1.6)
EPF00488e5akcE2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00488ECOD (1.6)
EPF05188e5akcE3 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF05188ECOD (1.6)
FPF05192e5akcF1 A: alpha bundlesX: Four-helical up-and-down bundleH: DNA repair protein MutS, domain III (From Topology)T: DNA repair protein MutS, domain IIIF: PF05192ECOD (1.6)
FPF00488e5akcF2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00488ECOD (1.6)
FPF05188e5akcF3 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF05188ECOD (1.6)
IPF05192e5akcI1 A: alpha bundlesX: Four-helical up-and-down bundleH: DNA repair protein MutS, domain III (From Topology)T: DNA repair protein MutS, domain IIIF: PF05192ECOD (1.6)
IPF00488e5akcI2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00488ECOD (1.6)
IPF05188e5akcI3 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF05188ECOD (1.6)
JPF05192e5akcJ1 A: alpha bundlesX: Four-helical up-and-down bundleH: DNA repair protein MutS, domain III (From Topology)T: DNA repair protein MutS, domain IIIF: PF05192ECOD (1.6)
JPF00488e5akcJ2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00488ECOD (1.6)
JPF05188e5akcJ3 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF05188ECOD (1.6)
CPF01119e5akcC1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF01119ECOD (1.6)
CPF13589e5akcC2 A: a+b two layersX: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-likeH: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase (From Topology)T: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinaseF: PF13589ECOD (1.6)
DPF01119e5akcD2 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF01119ECOD (1.6)
DPF13589e5akcD1 A: a+b two layersX: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-likeH: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase (From Topology)T: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinaseF: PF13589ECOD (1.6)
GPF01119e5akcG2 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF01119ECOD (1.6)
GPF13589e5akcG1 A: a+b two layersX: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-likeH: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase (From Topology)T: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinaseF: PF13589ECOD (1.6)
HPF01119e5akcH1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF01119ECOD (1.6)
HPF13589e5akcH2 A: a+b two layersX: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-likeH: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase (From Topology)T: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinaseF: PF13589ECOD (1.6)
KPF01119e5akcK2 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF01119ECOD (1.6)
KPF13589e5akcK1 A: a+b two layersX: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-likeH: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase (From Topology)T: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinaseF: PF13589ECOD (1.6)
LPF01119e5akcL1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF01119ECOD (1.6)
LPF13589e5akcL2 A: a+b two layersX: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-likeH: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase (From Topology)T: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinaseF: PF13589ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, E, F, I
PF05188MutS domain II (MutS_II)MutS domain IIThis domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with Pfam:PF00488, Pfam:PF01624, Pfam:PF05192 and Pfam:PF05190. The MutS family of proteins is named after the Salmonella typhimurium MutS prot ...This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with Pfam:PF00488, Pfam:PF01624, Pfam:PF05192 and Pfam:PF05190. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [2]. This domain corresponds to domain II in Thermus aquaticus MutS as characterised in [4], and has similarity resembles RNAse-H-like domains (see Pfam:PF00075).
Domain
A, B, E, F, I
PF05192MutS domain III (MutS_III)MutS domain IIIThis domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with Pfam:PF00488, Pfam:PF05188, Pfam:PF01624 and Pfam:PF05190. The MutS family of proteins is named after the Salmonella typhimurium MutS prot ...This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with Pfam:PF00488, Pfam:PF05188, Pfam:PF01624 and Pfam:PF05190. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [2]. The aligned region corresponds with domain III, which is central to the structure of Thermus aquaticus MutS as characterised in [4].
Domain
A, B, E, F, I
PF00488MutS domain V (MutS_V)MutS domain VThis domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with Pfam:PF01624, Pfam:PF05188, Pfam:PF05192 and Pfam:PF05190. The mutS family of proteins is named after the Salmonella typhimurium MutS prot ...This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with Pfam:PF01624, Pfam:PF05188, Pfam:PF05192 and Pfam:PF05190. The mutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [2]. The aligned region corresponds with domain V of Thermus aquaticus MutS as characterised in [4], which contains a Walker A motif, and is structurally similar to the ATPase domain of ABC transporters.
Domain
A, B, E, F, I
PF05190MutS family domain IV (MutS_IV)MutS family domain IVThis domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with Pfam:PF01624, Pfam:PF05188, Pfam:PF05192 and Pfam:PF00488. The mutS family of proteins is named after the Salmonella typhimurium MutS prot ...This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with Pfam:PF01624, Pfam:PF05188, Pfam:PF05192 and Pfam:PF00488. The mutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [2]. The aligned region corresponds in part with globular domain IV, which is involved in DNA binding, in Thermus aquaticus MutS as characterised in [4].
Domain
C, D, G, H, K
PF01119DNA mismatch repair protein, C-terminal domain (DNA_mis_repair)DNA mismatch repair protein, C-terminal domain- Family
C, D, G, H, K
PF13589Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c_3)Histidine kinase-, DNA gyrase B-, and HSP90-like ATPaseThis family represents, additionally, the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, E, F, I
DNA MISMATCH REPAIR PROTEIN MUTS
C, D, G, H, K
DNA MISMATCH REPAIR PROTEIN MUTL

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, E, F, I
IPR045076DNA mismatch repair MutS familyFamily
A, B, E, F, I
IPR005748DNA mismatch repair protein MutSFamily
A, B, E, F, I
IPR007861DNA mismatch repair protein MutS, clampDomain
A, B, E, F, I
IPR017261DNA mismatch repair protein MutS/MSHFamily
A, B, E, F, I
IPR016151DNA mismatch repair protein MutS, N-terminalHomologous Superfamily
A, B, E, F, I
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A, B, E, F, I
IPR000432DNA mismatch repair protein MutS, C-terminalDomain
A, B, E, F, I
IPR007696DNA mismatch repair protein MutS, coreDomain
A, B, E, F, I
IPR007860DNA mismatch repair protein MutS, connector domainDomain
A, B, E, F, I
IPR007695DNA mismatch repair protein MutS-like, N-terminalDomain
A, B, E, F, I
IPR036187DNA mismatch repair protein MutS, core domain superfamilyHomologous Superfamily
A, B, E, F, I
IPR036678MutS, connector domain superfamilyHomologous Superfamily
C, D, G, H, K
IPR038973DNA mismatch repair protein MutL/Mlh/Pms-likeFamily
C, D, G, H, K
IPR037198MutL, C-terminal domain superfamilyHomologous Superfamily
C, D, G, H, K
IPR013507DNA mismatch repair protein, S5 domain 2-likeDomain
C, D, G, H, K
IPR014790MutL, C-terminal, dimerisationDomain
C, D, G, H, K
IPR002099DNA mismatch repair protein MutL/Mlh/PMSFamily
C, D, G, H, K
IPR036890Histidine kinase/HSP90-like ATPase superfamilyHomologous Superfamily
C, D, G, H, K
IPR042121MutL, C-terminal domain, regulatory subdomainHomologous Superfamily
C, D, G, H, K
IPR042120MutL, C-terminal domain, dimerisation subdomainHomologous Superfamily
C, D, G, H, K
IPR014762DNA mismatch repair, conserved siteConserved Site
C, D, G, H, K
IPR020667DNA mismatch repair protein, MutLFamily
C, D, G, H, K
IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
C, D, G, H, K
IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily