5ZKU | pdb_00005zku

Crystal structure of DFA-IIIase from Arthrobacter chlorophenolicus A6 in complex with DFA-III

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2 Family	NosD-like	8097331	4005266	SCOP2 (2022-06-29)
F	SCOP2 Superfamily	Pectin lyase-like	8097332	3001746	SCOP2 (2022-06-29)
E	SCOP2B Superfamily	Pectin lyase-like	8097332	3001746	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Pectin lyase-like	8097332	3001746	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Pectin lyase-like	8097332	3001746	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Pectin lyase-like	8097332	3001746	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Pectin lyase-like	8097332	3001746	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Glyco_hydro_120	e5zkuF1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Pectin lyase-like (From Topology)	T: Pectin lyase-like	F: Glyco_hydro_120	ECOD (1.6)
E	Glyco_hydro_120	e5zkuE1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Pectin lyase-like (From Topology)	T: Pectin lyase-like	F: Glyco_hydro_120	ECOD (1.6)
D	Glyco_hydro_120	e5zkuD1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Pectin lyase-like (From Topology)	T: Pectin lyase-like	F: Glyco_hydro_120	ECOD (1.6)
C	Glyco_hydro_120	e5zkuC1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Pectin lyase-like (From Topology)	T: Pectin lyase-like	F: Glyco_hydro_120	ECOD (1.6)
B	Glyco_hydro_120	e5zkuB1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Pectin lyase-like (From Topology)	T: Pectin lyase-like	F: Glyco_hydro_120	ECOD (1.6)
A	Glyco_hydro_120	e5zkuA1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Pectin lyase-like (From Topology)	T: Pectin lyase-like	F: Glyco_hydro_120	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	2.160.20.10	Mainly Beta	3 Solenoid	Pectate Lyase C-like	Single-stranded right-handed beta-helix, Pectin lyase-like	CATH (utative)
E	2.160.20.10	Mainly Beta	3 Solenoid	Pectate Lyase C-like	Single-stranded right-handed beta-helix, Pectin lyase-like	CATH (utative)
D	2.160.20.10	Mainly Beta	3 Solenoid	Pectate Lyase C-like	Single-stranded right-handed beta-helix, Pectin lyase-like	CATH (utative)
C	2.160.20.10	Mainly Beta	3 Solenoid	Pectate Lyase C-like	Single-stranded right-handed beta-helix, Pectin lyase-like	CATH (utative)
B	2.160.20.10	Mainly Beta	3 Solenoid	Pectate Lyase C-like	Single-stranded right-handed beta-helix, Pectin lyase-like	CATH (utative)
A	2.160.20.10	Mainly Beta	3 Solenoid	Pectate Lyase C-like	Single-stranded right-handed beta-helix, Pectin lyase-like	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF05048	Periplasmic copper-binding protein (NosD) (NosD)	Periplasmic copper-binding protein (NosD)	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	DFA-IIIase	inulin fructotransferase (DFA-I-forming) activity lyase activity carbon-oxygen lyase activity, acting on polysaccharides catalytic activity carbon-oxygen lyase activity transferase activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR007742	Periplasmic copper-binding protein NosD, beta helix domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR012334	Pectin lyase fold	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR011050	Pectin lyase fold/virulence factor	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.