5ZEB
M. Smegmatis P/P state 70S ribosome structure
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| D [auth g] | SCOP2B Superfamily | Ribosomal protein S7 | 8077977 | 3000799 | SCOP2B (2022-06-29) |
| E [auth h] | SCOP2B Superfamily | Ribosomal protein S8 | 8079055 | 3000709 | SCOP2B (2022-06-29) |
| F [auth i] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8082671 | 3000100 | SCOP2B (2022-06-29) |
| G [auth j] | SCOP2B Superfamily | Ribosomal protein S10 | 8096980 | 3001336 | SCOP2B (2022-06-29) |
| H [auth k] | SCOP2B Superfamily | Translational machinery components | 8096984 | 3000571 | SCOP2B (2022-06-29) |
| I [auth l] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8096978 | 3000135 | SCOP2B (2022-06-29) |
| J [auth o] | SCOP2B Superfamily | S15/NS1 RNA-binding domain | 8072635 | 3001284 | SCOP2B (2022-06-29) |
| K [auth q] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8059280 | 3000135 | SCOP2B (2022-06-29) |
| M [auth s] | SCOP2B Superfamily | Ribosomal protein S19 | 8086054 | 3000686 | SCOP2B (2022-06-29) |
| P [auth n] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8059256 | 3000068 | SCOP2B (2022-06-29) |
| Q [auth b] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8063840 | 3001397 | SCOP2B (2022-06-29) |
| R [auth d] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8083402 | 3001473 | SCOP2B (2022-06-29) |
| T [auth m] | SCOP2B Superfamily | S13-like H2TH domain | 8096982 | 3000053 | SCOP2B (2022-06-29) |
| X [auth D] | SCOP2B Superfamily | Translational proteins | 8089146 | 3000811 | SCOP2B (2022-06-29) |
| Y [auth E] | SCOP2 Family | Ribosomal protein L4 | 8080697 | 4003628 | SCOP2 (2022-06-29) |
| Y [auth E] | SCOP2 Superfamily | Ribosomal protein L4 | 8080698 | 3001146 | SCOP2 (2022-06-29) |
| Z [auth F] | SCOP2B Superfamily | RL5-like | 8073880 | 3001709 | SCOP2B (2022-06-29) |
| EA [auth K] | SCOP2 Family | Ribosomal protein L13 | 8066066 | 4003623 | SCOP2 (2022-06-29) |
| EA [auth K] | SCOP2 Superfamily | Ribosomal protein L13 | 8066067 | 3001134 | SCOP2 (2022-06-29) |
| FA [auth L] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8072026 | 3000433 | SCOP2B (2022-06-29) |
| GA [auth M] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8070563 | 3001045 | SCOP2B (2022-06-29) |
| HA [auth N] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8076049 | 3000884 | SCOP2B (2022-06-29) |
| IA [auth O] | SCOP2B Superfamily | Prokaryotic ribosomal protein L17 | 8089012 | 3000995 | SCOP2B (2022-06-29) |
| KA [auth Q] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8082427 | 3000334 | SCOP2B (2022-06-29) |
| LA [auth R] | SCOP2B Superfamily | Ribosomal protein L20 | 8075008 | 3000563 | SCOP2B (2022-06-29) |
| MA [auth S] | SCOP2 Family | Ribosomal protein l21p | 8082444 | 4001630 | SCOP2 (2022-06-29) |
| MA [auth S] | SCOP2 Superfamily | l21p-like | 8082445 | 3002005 | SCOP2 (2022-06-29) |
| NA [auth T] | SCOP2B Superfamily | Ribosomal protein L22 | 8081516 | 3001078 | SCOP2B (2022-06-29) |
| OA [auth U] | SCOP2B Superfamily | Ribosomal proteins S24e L23 and L15e | 8077101 | 3000210 | SCOP2B (2022-06-29) |
| PA [auth V] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8082509 | 3000334 | SCOP2B (2022-06-29) |
| QA [auth W] | SCOP2B Superfamily | Ribosomal protein L25-like | 8082279 | 3001161 | SCOP2B (2022-06-29) |
| RA [auth X] | SCOP2 Family | Ribosomal L27 protein | 8075031 | 4001900 | SCOP2 (2022-06-29) |
| RA [auth X] | SCOP2 Superfamily | Ribosomal L27 protein-like | 8075032 | 3000539 | SCOP2 (2022-06-29) |
| SA [auth Y] | SCOP2B Superfamily | L28p-like | 8089398 | 3001966 | SCOP2B (2022-06-29) |
| TA [auth Z] | SCOP2 Family | Ribosomal protein L29 (L29p) | 8080677 | 4000600 | SCOP2 (2022-06-29) |
| TA [auth Z] | SCOP2 Superfamily | Ribosomal protein L29 (L29p) | 8080678 | 3000713 | SCOP2 (2022-06-29) |
| WA [auth 1] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8076279 | 3001378 | SCOP2B (2022-06-29) |
| XA [auth 2] | SCOP2 Family | Ribosomal protein L31p | 8086125 | 4003966 | SCOP2 (2022-06-29) |
| XA [auth 2] | SCOP2 Superfamily | L28p-like | 8086126 | 3001966 | SCOP2 (2022-06-29) |
| ZA [auth 4] | SCOP2 Family | Ribosomal protein L33p | 8075053 | 4000511 | SCOP2 (2022-06-29) |
| ZA [auth 4] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8075054 | 3001320 | SCOP2 (2022-06-29) |
| BB [auth 6] | SCOP2B Superfamily | L35p-like | 8083338 | 3000790 | SCOP2B (2022-06-29) |
| CB [auth 7] | SCOP2B Superfamily | Ribosomal protein L36 | 8083308 | 3001346 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B [auth c] | PF00189 | e5zebc1 | A: a+b two layers | X: T-fold | H: Ribosomal protein S3-C (From Topology) | T: Ribosomal protein S3-C | F: PF00189 | ECOD (1.6) |
| B [auth c] | PF07650 | e5zebc2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: PF07650 | ECOD (1.6) |
| C [auth e] | PF03719 | e5zebe1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF03719 | ECOD (1.6) |
| C [auth e] | PF00333 | e5zebe2 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: PF00333 | ECOD (1.6) |
| D [auth g] | PF00177 | e5zebg1 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: PF00177 | ECOD (1.6) |
| E [auth h] | PF00410 | e5zebh1 | A: a+b two layers | X: R3H domain-like | H: Ribosomal protein S8, N-terminal domain (From Topology) | T: Ribosomal protein S8, N-terminal domain | F: PF00410 | ECOD (1.6) |
| E [auth h] | PF00410 | e5zebh2 | A: a+b two layers | X: Ribosomal protein S8, C-terminal domain (From Topology) | H: Ribosomal protein S8, C-terminal domain (From Topology) | T: Ribosomal protein S8, C-terminal domain | F: PF00410 | ECOD (1.6) |
| F [auth i] | PF00380 | e5zebi1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF00380 | ECOD (1.6) |
| G [auth j] | PF00338 | e5zebj1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: PF00338 | ECOD (1.6) |
| H [auth k] | PF00411 | e5zebk1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00411 | ECOD (1.6) |
| I [auth l] | PF00164 | e5zebl1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00164 | ECOD (1.6) |
| J [auth o] | PF00312 | e5zebo1 | A: alpha arrays | X: S15/NS1 RNA-binding domain (From Topology) | H: S15/NS1 RNA-binding domain (From Topology) | T: S15/NS1 RNA-binding domain | F: PF00312 | ECOD (1.6) |
| K [auth q] | PF00366 | e5zebq1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00366 | ECOD (1.6) |
| L [auth r] | PF01084 | e5zebr1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF01084 | ECOD (1.6) |
| M [auth s] | PF00203 | e5zebs1 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: PF00203 | ECOD (1.6) |
| N [auth t] | PF01649 | e5zebt1 | A: alpha bundles | X: Spectrin repeat-like | H: Ribosomal protein S20 (From Topology) | T: Ribosomal protein S20 | F: PF01649 | ECOD (1.6) |
| P [auth n] | PF00253 | e5zebn1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF00253 | ECOD (1.6) |
| Q [auth b] | PF00318 | e5zebb1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Ribosomal protein S2/SIS domain (From Topology) | T: Ribosomal protein S2/SIS domain | F: PF00318 | ECOD (1.6) |
| R [auth d] | PF00163,PF01479 | e5zebd1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: PF00163,PF01479 | ECOD (1.6) |
| S [auth f] | PF01250 | e5zebf1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S6 (From Topology) | T: Ribosomal protein S6 | F: PF01250 | ECOD (1.6) |
| T [auth m] | PF00416 | e5zebm1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: PF00416 | ECOD (1.6) |
| U [auth p] | PF00886 | e5zebp1 | A: a+b two layers | X: Ribosomal protein S16 (From Topology) | H: Ribosomal protein S16 (From Topology) | T: Ribosomal protein S16 | F: PF00886 | ECOD (1.6) |
| W [auth C] | PF00181 | e5zebC2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00181 | ECOD (1.6) |
| W [auth C] | PF03947 | e5zebC1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF03947 | ECOD (1.6) |
| X [auth D] | PF00297 | e5zebD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF00297 | ECOD (1.6) |
| Y [auth E] | PF00573 | e5zebE1 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: PF00573 | ECOD (1.6) |
| Z [auth F] | PF00281,PF00673 | e5zebF1 | A: a+b two layers | X: Ribosomal protein L5 (From Topology) | H: Ribosomal protein L5 (From Topology) | T: Ribosomal protein L5 | F: PF00281,PF00673 | ECOD (1.6) |
| AA [auth G] | PF00347 | e5zebG1 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: PF00347 | ECOD (1.6) |
| BA [auth H] | PF01281 | e5zebH2 | A: a+b two layers | X: L9 N-domain-like | H: L9 N-domain-like (From Topology) | T: L9 N-domain-like | F: PF01281 | ECOD (1.6) |
| BA [auth H] | PF03948 | e5zebH1 | A: a+b two layers | X: Ribosomal protein L9 C-domain (From Topology) | H: Ribosomal protein L9 C-domain (From Topology) | T: Ribosomal protein L9 C-domain | F: PF03948 | ECOD (1.6) |
| CA [auth I] | PF00466 | e5zebI1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein L10-like (From Topology) | T: Ribosomal protein L10-like | F: PF00466 | ECOD (1.6) |
| DA [auth J] | PF00298 | e5zebJ2 | A: alpha arrays | X: HTH | H: HTH | T: Ribosomal protein L11, C-terminal domain | F: PF00298 | ECOD (1.6) |
| DA [auth J] | PF03946 | e5zebJ1 | A: a+b two layers | X: Ribosomal protein L11/L12e N-terminal domain-like | H: Ribosomal protein L11/L12e N-terminal domain (From Topology) | T: Ribosomal protein L11/L12e N-terminal domain | F: PF03946 | ECOD (1.6) |
| EA [auth K] | PF00572 | e5zebK1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: PF00572 | ECOD (1.6) |
| FA [auth L] | PF00238 | e5zebL1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: PF00238 | ECOD (1.6) |
| GA [auth M] | PF00828 | e5zebM1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: PF00828 | ECOD (1.6) |
| HA [auth N] | PF00252 | e5zebN1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: PF00252 | ECOD (1.6) |
| IA [auth O] | PF01196 | e5zebO1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Prokaryotic ribosomal protein L17 (From Topology) | T: Prokaryotic ribosomal protein L17 | F: PF01196 | ECOD (1.6) |
| JA [auth P] | PF00861 | e5zebP1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00861 | ECOD (1.6) |
| KA [auth Q] | PF01245 | e5zebQ1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01245 | ECOD (1.6) |
| LA [auth R] | PF00453 | e5zebR1 | A: alpha arrays | X: PABP domain-like | H: Ribosomal protein L20 (From Topology) | T: Ribosomal protein L20 | F: PF00453 | ECOD (1.6) |
| MA [auth S] | PF00829 | e5zebS1 | A: beta barrels | X: Ribosomal protein L21p (From Topology) | H: Ribosomal protein L21p (From Topology) | T: Ribosomal protein L21p | F: PF00829 | ECOD (1.6) |
| NA [auth T] | PF00237 | e5zebT1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: PF00237 | ECOD (1.6) |
| OA [auth U] | PF00276 | e5zebU1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: PF00276 | ECOD (1.6) |
| PA [auth V] | PF00467,PF17136 | e5zebV1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF00467,PF17136 | ECOD (1.6) |
| QA [auth W] | PF01386 | e5zebW1 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: PF01386 | ECOD (1.6) |
| QA [auth W] | PF14693 | e5zebW2 | A: a+b complex topology | X: Ribosomal protein TL5/L25 C-terminal domain-like | H: Ribosomal protein TL5/L25 C-terminal domain-related (From Topology) | T: Ribosomal protein TL5/L25 C-terminal domain-related | F: PF14693 | ECOD (1.6) |
| RA [auth X] | PF01016 | e5zebX1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: PF01016 | ECOD (1.6) |
| SA [auth Y] | PF00830 | e5zebY1 | A: few secondary structure elements | X: Ribosomal protein bL28-related (From Homology) | H: Ribosomal protein bL28-related | T: Ribosomal protein L28 | F: PF00830 | ECOD (1.6) |
| TA [auth Z] | PF00831 | e5zebZ1 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: PF00831 | ECOD (1.6) |
| WA [auth 1] | PF00327 | e5zeb11 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: PF00327 | ECOD (1.6) |
| XA [auth 2] | PF01197 | e5zeb21 | A: few secondary structure elements | X: Ribosomal protein L31p (From Topology) | H: Ribosomal protein L31p (From Topology) | T: Ribosomal protein L31p | F: PF01197 | ECOD (1.6) |
| YA [auth 3] | PF01783 | e5zeb31 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01783 | ECOD (1.6) |
| ZA [auth 4] | PF00471 | e5zeb41 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF00471 | ECOD (1.6) |
| AB [auth 5] | PF00468 | e5zeb51 | A: extended segments | X: 50S ribosomal protein L34 (From Topology) | H: 50S ribosomal protein L34 (From Topology) | T: 50S ribosomal protein L34 | F: PF00468 | ECOD (1.6) |
| BB [auth 6] | PF01632 | e5zeb61 | A: a+b two layers | X: Ribosomal protein L35p (From Topology) | H: Ribosomal protein L35p (From Topology) | T: Ribosomal protein L35p | F: PF01632 | ECOD (1.6) |
| CB [auth 7] | PF00444 | e5zeb71 | A: few secondary structure elements | X: Ribosomal protein L36 (From Topology) | H: Ribosomal protein L36 (From Topology) | T: Ribosomal protein L36 | F: PF00444 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| B [auth c] | PF07650 | KH domain (KH_2) | KH domain | - | Domain |
| B [auth c] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
| C [auth e] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | - | Domain |
| C [auth e] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | - | Domain |
| D [auth g] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
| E [auth h] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | - | Domain |
| F [auth i] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
| G [auth j] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
| H [auth k] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
| I [auth l] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | - | Family |
| J [auth o] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | - | Domain |
| K [auth q] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | - | Domain |
| L [auth r] | PF01084 | Ribosomal protein S18 (Ribosomal_S18) | Ribosomal protein S18 | - | Family |
| M [auth s] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | - | Domain |
| N [auth t] | PF01649 | Ribosomal protein S20 (Ribosomal_S20p) | Ribosomal protein S20 | - | Family |
| P [auth n] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
| Q [auth b] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
| R [auth d] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
| R [auth d] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
| T [auth m] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
| U [auth p] | PF00886 | Ribosomal protein S16 (Ribosomal_S16) | Ribosomal protein S16 | - | Family |
| V [auth u] | PF08213 | Mitochondrial mRNA-processing protein COX24, C-terminal (COX24_C) | Mitochondrial mRNA-processing protein COX24, C-terminal | This domain of unknown function is found at the C terminal end of Mitochondrial small ribosomal subunit protein mS38, also known as Mitochondrial mRNA-processing protein COX24 in yeast which is involved in the splicing of the COX1 mRNA [1]. COX24 is ... | Domain |
| W [auth C] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | - | Domain |
| W [auth C] | PF00181 | Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2) | Ribosomal Proteins L2, RNA binding domain | - | Domain |
| X [auth D] | PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family |
| Y [auth E] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
| Z [auth F] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | - | Domain |
| Z [auth F] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
| AA [auth G] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | - | Domain |
| BA [auth H] | PF01281 | Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N) | Ribosomal protein L9, N-terminal domain | - | Domain |
| BA [auth H] | PF03948 | Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C) | Ribosomal protein L9, C-terminal domain | - | Domain |
| CA [auth I] | PF00466 | Ribosomal protein L10 (Ribosomal_L10) | Ribosomal protein L10 | - | Family |
| DA [auth J] | PF03946 | Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) | Ribosomal protein L11, N-terminal domain | The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. | Domain |
| DA [auth J] | PF00298 | Ribosomal protein L11, RNA binding domain (Ribosomal_L11) | Ribosomal protein L11, RNA binding domain | - | Domain |
| EA [auth K] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
| FA [auth L] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | - | Domain |
| GA [auth M] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | - | Family |
| HA [auth N] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | - | Domain |
| IA [auth O] | PF01196 | Ribosomal protein L17 (Ribosomal_L17) | Ribosomal protein L17 | - | Family |
| JA [auth P] | PF00861 | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p) | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast | - | Family |
| KA [auth Q] | PF01245 | Ribosomal protein L19 (Ribosomal_L19) | Ribosomal protein L19 | - | Family |
| LA [auth R] | PF00453 | Ribosomal protein L20 (Ribosomal_L20) | Ribosomal protein L20 | - | Family |
| MA [auth S] | PF00829 | Ribosomal prokaryotic L21 protein (Ribosomal_L21p) | Ribosomal prokaryotic L21 protein | - | Family |
| NA [auth T] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
| OA [auth U] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
| PA [auth V] | PF17136 | Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24) | Ribosomal proteins 50S L24/mitochondrial 39S L24 | - | Family |
| PA [auth V] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| QA [auth W] | PF14693 | Ribosomal protein TL5, C-terminal domain (Ribosomal_TL5_C) | Ribosomal protein TL5, C-terminal domain | This family contains the C-terminal domain of ribosomal protein TL5. The N-terminal domain, which binds to 5S rRNA, is contained in family Ribosomal_L25p, Pfam:PF01386. Full length (N- and C-terminal domain) homologues of TL5 are also known as CTC pr ... | Domain |
| QA [auth W] | PF01386 | Ribosomal L25p family (Ribosomal_L25p) | Ribosomal L25p family | Ribosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. | Domain |
| RA [auth X] | PF01016 | Ribosomal L27 protein (Ribosomal_L27) | Ribosomal L27 protein | - | Family |
| SA [auth Y] | PF00830 | Ribosomal L28 family (Ribosomal_L28) | Ribosomal L28 family | - | Family |
| TA [auth Z] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
| WA [auth 1] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
| XA [auth 2] | PF01197 | Ribosomal protein L31 (Ribosomal_L31) | Ribosomal protein L31 | - | Family |
| YA [auth 3] | PF01783 | Ribosomal L32p protein family (Ribosomal_L32p) | Ribosomal L32p protein family | - | Family |
| ZA [auth 4] | PF00471 | Ribosomal protein L33 (Ribosomal_L33) | Ribosomal protein L33 | - | Family |
| AB [auth 5] | PF00468 | Ribosomal protein L34 (Ribosomal_L34) | Ribosomal protein L34 | - | Family |
| BB [auth 6] | PF01632 | Ribosomal protein L35 (Ribosomal_L35p) | Ribosomal protein L35 | - | Family |
| CB [auth 7] | PF00444 | Ribosomal protein L36 (Ribosomal_L36) | Ribosomal protein L36 | - | Domain |
