5ZBK

Crystal structure of type-I LOG from Pseudomonas aeruginosa PAO1 in complex with AMP

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d5zbka_	Alpha and beta proteins (a/b)	MCP/YpsA-like	MCP/YpsA-like	automated matches	automated matches	(Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	MCP/YpsA-like	8061791	3000672	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Lysine_decarbox	e5zbkA1	A: a/b three-layered sandwiches	X: MCP/YpsA-related (From Topology)	H: MCP/YpsA-related (From Topology)	T: MCP/YpsA-related	F: Lysine_decarbox	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.450	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF03641	Possible lysine decarboxylase (Lysine_decarbox)	Possible lysine decarboxylase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Putative cytokinin riboside 5'-monophosphate phosphoribohydrolase	hydrolase activity, acting on glycosyl bonds hydrolase activity hydrolase activity, hydrolyzing N-glycosyl compounds catalytic activity cytokinin riboside 5'-monophosphate phosphoribohydrolase activity AMP nucleosidase activity	organonitrogen compound metabolic process cytokinin metabolic process regulation of hormone levels cellular biosynthetic process cellular metabolic process biological regulation cytokinin biosynthetic process hormone metabolic process amine metabolic process organic substance metabolic process biosynthetic process metabolic process cellular process regulation of biological quality organonitrogen compound metabolic process cytokinin metabolic process regulation of hormone levels cellular biosynthetic process cellular metabolic process biological regulation cytokinin biosynthetic process hormone metabolic process amine metabolic process organic substance metabolic process biosynthetic process metabolic process cellular process regulation of biological quality hormone biosynthetic process	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR005269	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG	Family
A	IPR031100	LOG family	Family

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.