Crystal structure of the novel lesion-specific endonuclease PfuEndoQ from Pyrococcus furiosus
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| E | Flavin containing amine oxidoreductase / NAD(P)-binding Rossmann-like domain | e5zb8E1 | A: alpha arrays | X: PriB N-terminal domain-like | H: Ubiquitin-related | T: Ubiquitin-like | F: Flavin containing amine oxidoreductase / NAD(P)-binding Rossmann-like domain | ECOD (v295.2) |
| D | Flavin containing amine oxidoreductase / NAD(P)-binding Rossmann-like domain | e5zb8D1 | A: alpha arrays | X: PriB N-terminal domain-like | H: Ubiquitin-related | T: Ubiquitin-like | F: Flavin containing amine oxidoreductase / NAD(P)-binding Rossmann-like domain | ECOD (v295.2) |
| C | Flavin containing amine oxidoreductase / NAD(P)-binding Rossmann-like domain | e5zb8C1 | A: alpha arrays | X: PriB N-terminal domain-like | H: Ubiquitin-related | T: Ubiquitin-like | F: Flavin containing amine oxidoreductase / NAD(P)-binding Rossmann-like domain | ECOD (v295.2) |
| B | Flavin containing amine oxidoreductase / NAD(P)-binding Rossmann-like domain | e5zb8B1 | A: alpha arrays | X: PriB N-terminal domain-like | H: Ubiquitin-related | T: Ubiquitin-like | F: Flavin containing amine oxidoreductase / NAD(P)-binding Rossmann-like domain | ECOD (v295.2) |
| A | Metallophos | e5zb8A1 | A: alpha arrays | X: L-aspartase middle domain-like | H: L-aspartase middle domain-like | T: L-aspartase middle domain-like | F: Metallophos | ECOD (v295.2) |
| A | FtsX | e5zb8A3 | A: alpha arrays | X: L-aspartase middle domain-like | H: L-aspartase middle domain-like | T: L-aspartase middle domain-like | F: FtsX | ECOD (v295.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| E | 3.20.20.140 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Metal-dependent hydrolases | CATH (utative) |
| D | 3.20.20.140 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Metal-dependent hydrolases | CATH (utative) |
| C | 3.20.20.140 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Metal-dependent hydrolases | CATH (utative) |
| B | 3.20.20.140 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Metal-dependent hydrolases | CATH (utative) |
| A | 3.20.20.140 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Metal-dependent hydrolases | CATH (utative) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| PfuEndoQ | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR060064 | MJ0043/EndoQ-like, C-terminal domain | Domain | |
| IPR059260 | EndoQ-like | Family | |
| IPR016195 | Polymerase/histidinol phosphatase-like | Homologous Superfamily | |
| IPR005287 | Conserved hypothetical protein CHP00375 | Family | |
| IPR018527 | Rubredoxin, iron-binding site | Binding Site |