5YZ6

Solution structure of LysM domain from a chitinase derived from Volvox carteri

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad5yz6a_ Alpha and beta proteins (a+b) LysM domain LysM domain automated matches automated matches (Volvox carteri f. nagariensis ) [TaxId: 3068 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF01476e5yz6A1 A: alpha arraysX: HTHH: LysM domain (From Topology)T: LysM domainF: PF01476ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.10.350.10 Alpha Beta Roll Membrane-bound Lytic Murein Transglycosylase D Chain ACATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF01476LysM domain (LysM)LysM domainThe LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation [1]. This domain may have a general peptidoglycan binding function. The structure of this domain is known [2].Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR036779LysM domain superfamilyHomologous Superfamily
IPR018392LysM domainDomain