Solution structure of LysM domain from a chitinase derived from Volvox carteri
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | d5yz6a_ | Alpha and beta proteins (a+b) | LysM domain | LysM domain | automated matches | automated matches | (Volvox carteri f. nagariensis ) [TaxId: 3068 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | PLAT | e5yz6A1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: a+b domain in beta-lactamase/transpeptidase-like proteins | T: a+b domain in beta-lactamase/transpeptidase-like proteins | F: PLAT | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 3.10.350.10 | Alpha Beta | Roll | Membrane-bound Lytic Murein Transglycosylase D | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF01476 | LysM domain (LysM) | LysM domain | The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation [1]. This domain may have a general peptidoglycan binding function. The structure of this domain is known [2]. | Domain |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR036779 | LysM domain superfamily | Homologous Superfamily | |
| IPR018392 | LysM domain | Domain |
