5YU6
CRYSTAL STRUCTURE OF EXPORTIN-5:RANGTP COMPLEX
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth B] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8060226 | 3002022 | SCOP2B (2022-06-29) |
F [auth D] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8060226 | 3002022 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | CRM1_C | e5yu6A1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: CRM1_C | ECOD (1.6) |
D [auth C] | CRM1_C | e5yu6C1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: CRM1_C | ECOD (1.6) |
C [auth B] | Ras | e5yu6B1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
F [auth D] | Ras | e5yu6D1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.25.10.10 | Mainly Alpha | Alpha Horseshoe | Leucine-rich Repeat Variant | Leucine-rich Repeat Variant | CATH (4.3.0) |
D [auth C] | 1.25.10.10 | Mainly Alpha | Alpha Horseshoe | Leucine-rich Repeat Variant | Leucine-rich Repeat Variant | CATH (4.3.0) |
C [auth B] | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
F [auth D] | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, D [auth C] | PF19273 | Exportin-5 family (Exportin-5) | Exportin-5 family | - | Family |
A, D [auth C] | PF08389 | Exportin 1-like protein (Xpo1) | Exportin 1-like protein | - | Repeat |
A, D [auth C] | PF03810 | Importin-beta N-terminal domain (IBN_N) | Importin-beta N-terminal domain | - | Repeat |
C [auth B], F [auth D] | PF00071 | Ras family (Ras) | Ras family | Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motil ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, D [auth C] | IPR016024 | Armadillo-type fold | Homologous Superfamily |
A, D [auth C] | IPR013598 | Exportin-1/Importin-beta-like | Domain |
A, D [auth C] | IPR001494 | Importin-beta, N-terminal domain | Domain |
A, D [auth C] | IPR011989 | Armadillo-like helical | Homologous Superfamily |
A, D [auth C] | IPR045065 | Exportin-1/5 | Family |
A, D [auth C] | IPR045478 | Exportin-5, C-terminal domain | Domain |
C [auth B], F [auth D] | IPR002041 | Ran GTPase | Family |
C [auth B], F [auth D] | IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |
C [auth B], F [auth D] | IPR005225 | Small GTP-binding domain | Domain |
C [auth B], F [auth D] | IPR001806 | Small GTPase | Family |