5YSK | pdb_00005ysk

SdeA mART-C domain EE/AA apo

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Kdo_hydroxy	e5yskD1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: a+b domain in acetyl-CoA synthetase-like proteins	T: a+b domain in acetyl-CoA synthetase-like proteins	F: Kdo_hydroxy	ECOD (v294.1)
C	Kdo_hydroxy	e5yskC1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: a+b domain in acetyl-CoA synthetase-like proteins	T: a+b domain in acetyl-CoA synthetase-like proteins	F: Kdo_hydroxy	ECOD (v294.1)
B	Kdo_hydroxy	e5yskB1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: a+b domain in acetyl-CoA synthetase-like proteins	T: a+b domain in acetyl-CoA synthetase-like proteins	F: Kdo_hydroxy	ECOD (v294.1)
A	Kdo_hydroxy	e5yskA1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: a+b domain in acetyl-CoA synthetase-like proteins	T: a+b domain in acetyl-CoA synthetase-like proteins	F: Kdo_hydroxy	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Ubiquitinating/deubiquitinating enzyme SdeA	K63-linked deubiquitinase activity ubiquitin-like protein peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity deubiquitinase activity deNEDDylase activity pentosyltransferase activity NAD+-protein-arginine ADP-ribosyltransferase activity glycosyltransferase activity transferase activity NAD+-protein mono-ADP-ribosyltransferase activity binding K63-linked deubiquitinase activity ubiquitin-like protein peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity deubiquitinase activity deNEDDylase activity pentosyltransferase activity NAD+-protein-arginine ADP-ribosyltransferase activity glycosyltransferase activity transferase activity NAD+-protein mono-ADP-ribosyltransferase activity binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding cysteine-type peptidase activity nucleotidyltransferase activity transferase activity, transferring phosphorus-containing groups	protein deubiquitination primary metabolic process protein modification by small protein removal macromolecule modification metabolic process cellular process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation or removal protein deneddylation protein ubiquitination protein modification by small protein conjugation protein deubiquitination primary metabolic process protein modification by small protein removal macromolecule modification metabolic process cellular process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation or removal protein deneddylation protein ubiquitination protein modification by small protein conjugation proteolysis	host cellular component cellular anatomical structure host cell other organism part extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR043935	SidE, mono-ADP-ribosyltransferase domain	Domain
A, B, C, D	IPR021014	SidE, PDE domain	Domain
A, B, C, D	IPR043934	SidE, DUB domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.