5YQT

Crystal Structure of the L74F/M78V/I80V/L114F mutant of LEH complexed with cyclopentene oxide

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A [auth C]	d5yqtc_	Alpha and beta proteins (a+b)	Cystatin-like	NTF2-like	Limonene-1,2-epoxide hydrolase-like	Limonene-1,2-epoxide hydrolase	Arthrobacter picolinophilus (Rhodococcus erythropolis ) [TaxId: 1833 ],	SCOPe (2.08)
B [auth D]	d5yqtd_	Alpha and beta proteins (a+b)	Cystatin-like	NTF2-like	Limonene-1,2-epoxide hydrolase-like	Limonene-1,2-epoxide hydrolase	Arthrobacter picolinophilus (Rhodococcus erythropolis ) [TaxId: 1833 ],	SCOPe (2.08)
C [auth A]	d5yqta_	Alpha and beta proteins (a+b)	Cystatin-like	NTF2-like	Limonene-1,2-epoxide hydrolase-like	Limonene-1,2-epoxide hydrolase	Arthrobacter picolinophilus (Rhodococcus erythropolis ) [TaxId: 1833 ],	SCOPe (2.08)
D [auth B]	d5yqtb_	Alpha and beta proteins (a+b)	Cystatin-like	NTF2-like	Limonene-1,2-epoxide hydrolase-like	Limonene-1,2-epoxide hydrolase	Arthrobacter picolinophilus (Rhodococcus erythropolis ) [TaxId: 1833 ],	SCOPe (2.08)
E	d5yqte_	Alpha and beta proteins (a+b)	Cystatin-like	NTF2-like	Limonene-1,2-epoxide hydrolase-like	Limonene-1,2-epoxide hydrolase	Arthrobacter picolinophilus (Rhodococcus erythropolis ) [TaxId: 1833 ],	SCOPe (2.08)
F	d5yqtf_	Alpha and beta proteins (a+b)	Cystatin-like	NTF2-like	Limonene-1,2-epoxide hydrolase-like	Limonene-1,2-epoxide hydrolase	Arthrobacter picolinophilus (Rhodococcus erythropolis ) [TaxId: 1833 ],	SCOPe (2.08)
G	d5yqtg_	Alpha and beta proteins (a+b)	Cystatin-like	NTF2-like	Limonene-1,2-epoxide hydrolase-like	Limonene-1,2-epoxide hydrolase	Arthrobacter picolinophilus (Rhodococcus erythropolis ) [TaxId: 1833 ],	SCOPe (2.08)
H	d5yqth_	Alpha and beta proteins (a+b)	Cystatin-like	NTF2-like	Limonene-1,2-epoxide hydrolase-like	Limonene-1,2-epoxide hydrolase	Arthrobacter picolinophilus (Rhodococcus erythropolis ) [TaxId: 1833 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth C]	SCOP2B Superfamily	NTF2-like	8033663	3000472	SCOP2B (2022-06-29)
B [auth D]	SCOP2B Superfamily	NTF2-like	8033663	3000472	SCOP2B (2022-06-29)
C [auth A]	SCOP2B Superfamily	NTF2-like	8033663	3000472	SCOP2B (2022-06-29)
D [auth B]	SCOP2B Superfamily	NTF2-like	8033663	3000472	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	NTF2-like	8033663	3000472	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	NTF2-like	8033663	3000472	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	NTF2-like	8033663	3000472	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	NTF2-like	8033663	3000472	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth C]	PF07858	e5yqtC1	A: a+b two layers	X: Cystatin-like	H: NTF2-like (From Topology)	T: NTF2-like	F: PF07858	ECOD (1.6)
B [auth D]	PF07858	e5yqtD1	A: a+b two layers	X: Cystatin-like	H: NTF2-like (From Topology)	T: NTF2-like	F: PF07858	ECOD (1.6)
C [auth A]	PF07858	e5yqtA1	A: a+b two layers	X: Cystatin-like	H: NTF2-like (From Topology)	T: NTF2-like	F: PF07858	ECOD (1.6)
D [auth B]	PF07858	e5yqtB1	A: a+b two layers	X: Cystatin-like	H: NTF2-like (From Topology)	T: NTF2-like	F: PF07858	ECOD (1.6)
E	PF07858	e5yqtE1	A: a+b two layers	X: Cystatin-like	H: NTF2-like (From Topology)	T: NTF2-like	F: PF07858	ECOD (1.6)
F	PF07858	e5yqtF1	A: a+b two layers	X: Cystatin-like	H: NTF2-like (From Topology)	T: NTF2-like	F: PF07858	ECOD (1.6)
G	PF07858	e5yqtG1	A: a+b two layers	X: Cystatin-like	H: NTF2-like (From Topology)	T: NTF2-like	F: PF07858	ECOD (1.6)
H	PF07858	e5yqtH1	A: a+b two layers	X: Cystatin-like	H: NTF2-like (From Topology)	T: NTF2-like	F: PF07858	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A [auth C]	3.10.450.50	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
B [auth D]	3.10.450.50	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
C [auth A]	3.10.450.50	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
D [auth B]	3.10.450.50	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
E	3.10.450.50	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
F	3.10.450.50	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
G	3.10.450.50	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
H	3.10.450.50	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth C], B [auth D], C [auth A], D [auth B], E, A [auth C], B [auth D], C [auth A], D [auth B], E, F, G, H	PF07858	Limonene-1,2-epoxide hydrolase catalytic domain (LEH)	Limonene-1,2-epoxide hydrolase catalytic domain	Epoxide hydrolases catalyse the hydrolysis of epoxides to corresponding diols, which is important in detoxification, synthesis of signal molecules, or metabolism. Limonene-1,2- epoxide hydrolase (LEH) differs from many other epoxide hydrolases in its ...	Epoxide hydrolases catalyse the hydrolysis of epoxides to corresponding diols, which is important in detoxification, synthesis of signal molecules, or metabolism. Limonene-1,2- epoxide hydrolase (LEH) differs from many other epoxide hydrolases in its structure and its novel one-step catalytic mechanism. Its main fold consists of a six-stranded mixed beta-sheet, with three N-terminal alpha helices packed to one side to create a pocket that extends into the protein core. A fourth helix lies in such a way that it acts as a rim to this pocket. Although mainly lined by hydrophobic residues, this pocket features a cluster of polar groups that lie at its deepest point and constitute the enzyme's active site [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth C], B [auth D], C [auth A], D [auth B], E, A [auth C], B [auth D], C [auth A], D [auth B], E, F, G, H	Limonene-1,2-epoxide hydrolase	epoxide hydrolase activity ether hydrolase activity hydrolase activity, acting on ether bonds hydrolase activity limonene-1,2-epoxide hydrolase activity catalytic activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth C], B [auth D], C [auth A], D [auth B], E, A [auth C], B [auth D], C [auth A], D [auth B], E, F, G, H	IPR032710	NTF2-like domain superfamily	Homologous Superfamily
A [auth C], B [auth D], C [auth A], D [auth B], E, A [auth C], B [auth D], C [auth A], D [auth B], E, F, G, H	IPR013100	Limonene-1,2-epoxide hydrolase	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.