5YNR | pdb_00005ynr

Solution Structure of glia maturation factor from Caenorhabditis elegans

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Cofilin-like	8088537	4001833	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Actin depolymerizing proteins	8088538	3000430	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Transglut_prok	e5ynrA1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Transglut_prok	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.20.10	Alpha Beta	3-Layer(aba) Sandwich	Severin	Severin	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00241	Cofilin/tropomyosin-type actin-binding protein (Cofilin_ADF)	Cofilin/tropomyosin-type actin-binding protein	Severs actin filaments and binds to actin monomers.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Glia Mutation factor	cytoskeletal protein binding actin binding protein binding binding protein-containing complex binding Arp2/3 complex binding	regulation of Arp2/3 complex-mediated actin nucleation regulation of cytoskeleton organization regulation of cellular component organization regulation of cellular process regulation of actin filament-based process negative regulation of biological process cellular component organization regulation of actin nucleation actin filament-based process negative regulation of cellular process cellular component organization or biogenesis negative regulation of supramolecular fiber organization negative regulation of actin nucleation negative regulation of Arp2/3 complex-mediated actin nucleation regulation of Arp2/3 complex-mediated actin nucleation regulation of cytoskeleton organization regulation of cellular component organization regulation of cellular process regulation of actin filament-based process negative regulation of biological process cellular component organization regulation of actin nucleation actin filament-based process negative regulation of cellular process cellular component organization or biogenesis negative regulation of supramolecular fiber organization negative regulation of actin nucleation negative regulation of Arp2/3 complex-mediated actin nucleation regulation of biological process regulation of actin filament organization actin cytoskeleton organization negative regulation of cellular component organization negative regulation of cytoskeleton organization actin filament organization biological regulation Arp2/3 complex-mediated actin nucleation regulation of organelle organization organelle organization negative regulation of organelle organization regulation of actin cytoskeleton organization regulation of supramolecular fiber organization cellular process actin nucleation supramolecular fiber organization cytoskeleton organization actin filament severing actin filament debranching	intracellular anatomical structure cell cortex cortical cytoskeleton intracellular membraneless organelle actin cytoskeleton intracellular organelle cell periphery cellular anatomical structure cytoskeleton organelle membraneless organelle cortical actin cytoskeleton cytoplasm membrane-bounded organelle intracellular anatomical structure cell cortex cortical cytoskeleton intracellular membraneless organelle actin cytoskeleton intracellular organelle cell periphery cellular anatomical structure cytoskeleton organelle membraneless organelle cortical actin cytoskeleton cytoplasm membrane-bounded organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR029006	ADF-H/Gelsolin-like domain superfamily	Homologous Superfamily
A	IPR002108	Actin-depolymerising factor homology domain	Domain
A	IPR011171	Glia maturation factor	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.