5Y9V | pdb_00005y9v

Crystal structure of diamondback moth ryanodine receptor N-terminal domain

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d5y9vb_	All beta proteins	beta-Trefoil	MIR domain	Ryanodine receptor N-terminal-like	automated matches	Diamondback moth (Plutella xylostella ) [TaxId: 51655 ],	SCOPe (2.08)
A	d5y9va_	All beta proteins	beta-Trefoil	MIR domain	Ryanodine receptor N-terminal-like	automated matches	Diamondback moth (Plutella xylostella ) [TaxId: 51655 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	ATP-synt_VA_C	e5y9vB1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: ATP-synt_VA_C	ECOD (v294.1)
A	Ank,Ank_2	e5y9vA1	A: a/b three-layered sandwiches	X: Protein kinase/SAICAR synthase/ATP-grasp	H: Protein kinase/SAICAR synthase/ATP-grasp	T: Undecaprenyl diphosphate synthase	F: Ank,Ank_2	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Ryanodine receptor 1	calcium-induced calcium release activity calcium channel activity monoatomic cation transmembrane transporter activity intracellularly ligand-gated monoatomic ion channel activity gated channel activity monoatomic ion channel activity ryanodine-sensitive calcium-release channel activity intracellularly gated calcium channel activity ligand-gated channel activity ligand-gated monoatomic ion channel activity monoatomic cation channel activity passive transmembrane transporter activity calcium ion transmembrane transporter activity channel activity ligand-gated calcium channel activity calcium-induced calcium release activity calcium channel activity monoatomic cation transmembrane transporter activity intracellularly ligand-gated monoatomic ion channel activity gated channel activity monoatomic ion channel activity ryanodine-sensitive calcium-release channel activity intracellularly gated calcium channel activity ligand-gated channel activity ligand-gated monoatomic ion channel activity monoatomic cation channel activity passive transmembrane transporter activity calcium ion transmembrane transporter activity channel activity ligand-gated calcium channel activity monoatomic ion transmembrane transporter activity transporter activity metal ion transmembrane transporter activity ligand-gated monoatomic cation channel activity transmembrane transporter activity	multicellular organismal process system process muscle contraction muscle system process striated muscle contraction inorganic ion homeostasis intracellular calcium ion homeostasis homeostatic process calcium ion homeostasis cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis multicellular organismal process system process muscle contraction muscle system process striated muscle contraction inorganic ion homeostasis intracellular calcium ion homeostasis homeostatic process calcium ion homeostasis cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis release of sequestered calcium ion into cytosol by endoplasmic reticulum calcium ion transmembrane import into cytosol transport monoatomic ion transmembrane transport sarcoplasmic reticulum calcium ion transport release of sequestered calcium ion into cytosol by sarcoplasmic reticulum establishment of localization calcium ion transport metal ion transport monoatomic cation transmembrane transport transmembrane transport localization release of sequestered calcium ion into cytosol intercellular transport monoatomic ion transport cellular process monoatomic cation transport calcium ion transmembrane transport	intracellular anatomical structure intracellular membraneless organelle Z disc sarcomere intracellular organelle I band cellular anatomical structure organelle membraneless organelle contractile muscle fiber cytoplasm supramolecular fiber myofibril supramolecular polymer intracellular anatomical structure intracellular membraneless organelle Z disc sarcomere intracellular organelle I band cellular anatomical structure organelle membraneless organelle contractile muscle fiber cytoplasm supramolecular fiber myofibril supramolecular polymer supramolecular complex membrane-bounded organelle organelle subcompartment membrane intracellular membrane-bounded organelle endomembrane system sarcoplasm endoplasmic reticulum subcompartment bounding membrane of organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum sarcoplasmic reticulum sarcoplasmic reticulum membrane organelle membrane endoplasmic reticulum membrane cell periphery sarcolemma plasma membrane smooth endoplasmic reticulum protein-containing complex transmembrane transporter complex membrane protein complex cation channel complex transporter complex calcium channel complex monoatomic ion channel complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR003032	Ryanodine receptor Ryr	Domain
A, B	IPR036300	Mir domain superfamily	Homologous Superfamily
A, B	IPR000699	RIH domain	Domain
A, B	IPR013662	RyR/IP3R Homology associated domain	Domain
A, B	IPR016093	MIR motif	Domain
A, B	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
A, B	IPR035761	Ryanodine receptor, SPRY domain 1	Domain
A, B	IPR014821	Inositol 1,4,5-trisphosphate/ryanodine receptor	Domain
A, B	IPR035764	Ryanodine receptor, SPRY domain 2	Domain
A, B	IPR013333	Ryanodine receptor	Family
A, B	IPR043136	B30.2/SPRY domain superfamily	Homologous Superfamily
A, B	IPR011992	EF-hand domain pair	Homologous Superfamily
A, B	IPR003877	SPRY domain	Domain
A, B	IPR005821	Ion transport domain	Domain
A, B	IPR001870	B30.2/SPRY domain	Domain
A, B	IPR009460	Ryanodine Receptor TM 4-6	Domain
A, B	IPR015925	Ryanodine/Inositol 1,4,5-trisphosphate receptor	Family
A, B	IPR035762	Ryanodine receptor, SPRY domain 3	Domain
A, B	IPR048581	Ryanodine receptor, junctional solenoid domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.