5Y83 | pdb_00005y83

Crystal structure of YidC from Thermotoga maritima

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	YidC transmembrane domain-like	8101844	4006662	SCOP2 (2022-06-29)
A	SCOP2 Family	YidC periplasmic domain-like	8101845	4007001	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	YidC transmembrane domain-like	8101846	3002720	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Galactose mutarotase-like	8101847	3000035	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	UNK_F_TYPE	e5y83A2	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: supersandwich (From Topology)	T: supersandwich	F: UNK_F_TYPE	ECOD (1.6)
A	60KD_IMP	e5y83A1	A: alpha bundles	X: Membrane protein insertase YidC-related (From Homology)	H: Membrane protein insertase YidC-related	T: Membrane protein insertase YidC	F: 60KD_IMP	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF02096	60Kd inner membrane protein (60KD_IMP)	60Kd inner membrane protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Membrane protein insertase YidC	protein carrier chaperone membrane insertase activity molecular carrier activity	membrane organization establishment of protein localization cellular localization establishment of protein localization to membrane localization within membrane establishment of localization cellular component organization localization macromolecule localization cellular process cellular component organization or biogenesis intracellular protein localization protein insertion into membrane nitrogen compound transport membrane organization establishment of protein localization cellular localization establishment of protein localization to membrane localization within membrane establishment of localization cellular component organization localization macromolecule localization cellular process cellular component organization or biogenesis intracellular protein localization protein insertion into membrane nitrogen compound transport protein transport transport	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR047196	Membrane insertase YidC/ALB, C-terminal	Domain
A	IPR019998	Membrane insertase YidC	Family
A	IPR001708	Membrane insertase YidC/ALB3/OXA1/COX18	Family
A	IPR028055	Membrane insertase YidC/Oxa/ALB, C-terminal	Domain

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A	OPM	Transmembrane	Alpha-helical polytopic	Cytochrome oxidase biogenesis family	OxaA/YidC

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Sec, Translocase, and Insertase Proteins	YidC insertase

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.