5Y58
Crystal structure of Ku70/80 and TLC1
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
G [auth E] | PF02735,PF03730 | e5y58E1 | A: beta barrels | X: SPOC domain-like | H: SPOC domain-related | T: Ku70/80 subunit middle domain | F: PF02735,PF03730 | ECOD (1.6) |
G [auth E] | PF03731 | e5y58E2 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: PF03731 | ECOD (1.6) |
A | PF02735,PF03730 | e5y58A1 | A: beta barrels | X: SPOC domain-like | H: SPOC domain-related | T: Ku70/80 subunit middle domain | F: PF02735,PF03730 | ECOD (1.6) |
A | PF03731 | e5y58A2 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: PF03731 | ECOD (1.6) |
D [auth C] | PF02735,PF03730 | e5y58C1 | A: beta barrels | X: SPOC domain-like | H: SPOC domain-related | T: Ku70/80 subunit middle domain | F: PF02735,PF03730 | ECOD (1.6) |
D [auth C] | PF03731 | e5y58C2 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: PF03731 | ECOD (1.6) |
B | PF02735 | e5y58B1 | A: beta barrels | X: SPOC domain-like | H: SPOC domain-related | T: Ku70/80 subunit middle domain | F: PF02735 | ECOD (1.6) |
B | PF03731 | e5y58B2 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: PF03731 | ECOD (1.6) |
E [auth D] | PF02735 | e5y58D1 | A: beta barrels | X: SPOC domain-like | H: SPOC domain-related | T: Ku70/80 subunit middle domain | F: PF02735 | ECOD (1.6) |
E [auth D] | PF03731 | e5y58D2 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: PF03731 | ECOD (1.6) |
H [auth F] | PF02735 | e5y58F1 | A: beta barrels | X: SPOC domain-like | H: SPOC domain-related | T: Ku70/80 subunit middle domain | F: PF02735 | ECOD (1.6) |
H [auth F] | PF03731 | e5y58F2 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: PF03731 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, D [auth C], G [auth E] | PF02735 | Ku70/Ku80 beta-barrel domain (Ku) | Ku70/Ku80 beta-barrel domain | The Ku heterodimer (composed of Ku70 Swiss:P12956 and Ku80 Swiss:P13010) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the central DNA-bi ... | Domain |
A, D [auth C], G [auth E] | PF03730 | Ku70/Ku80 C-terminal arm (Ku_C) | Ku70/Ku80 C-terminal arm | - | Family |
A, D [auth C], G [auth E] | PF03731 | Ku70/Ku80 N-terminal alpha/beta domain (Ku_N) | Ku70/Ku80 N-terminal alpha/beta domain | The Ku heterodimer (composed of Ku70 Swiss:P12956 and Ku80 Swiss:P13010) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the amino terminal ... | Domain |
B, E [auth D], H [auth F] | PF02735 | Ku70/Ku80 beta-barrel domain (Ku) | Ku70/Ku80 beta-barrel domain | The Ku heterodimer (composed of Ku70 Swiss:P12956 and Ku80 Swiss:P13010) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the central DNA-bi ... | Domain |
B, E [auth D], H [auth F] | PF03731 | Ku70/Ku80 N-terminal alpha/beta domain (Ku_N) | Ku70/Ku80 N-terminal alpha/beta domain | The Ku heterodimer (composed of Ku70 Swiss:P12956 and Ku80 Swiss:P13010) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the amino terminal ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, D [auth C], G [auth E] | IPR016194 | SPOC-like, C-terminal domain superfamily | Homologous Superfamily |
A, D [auth C], G [auth E] | IPR005161 | Ku70/Ku80, N-terminal alpha/beta | Domain |
A, D [auth C], G [auth E] | IPR047087 | Ku70, core domain | Domain |
A, D [auth C], G [auth E] | IPR005160 | Ku70/Ku80 C-terminal arm | Domain |
A, D [auth C], G [auth E] | IPR006165 | Ku70 | Family |
A, D [auth C], G [auth E] | IPR006164 | Ku70/Ku80 beta-barrel domain | Domain |
A, D [auth C], G [auth E] | IPR036465 | von Willebrand factor A-like domain superfamily | Homologous Superfamily |
B, E [auth D], H [auth F] | IPR024193 | Ku80 | Family |
B, E [auth D], H [auth F] | IPR016194 | SPOC-like, C-terminal domain superfamily | Homologous Superfamily |
B, E [auth D], H [auth F] | IPR006164 | Ku70/Ku80 beta-barrel domain | Domain |
B, E [auth D], H [auth F] | IPR036465 | von Willebrand factor A-like domain superfamily | Homologous Superfamily |
B, E [auth D], H [auth F] | IPR005161 | Ku70/Ku80, N-terminal alpha/beta | Domain |