Annotations: 5Y53

Crystal structure of AL2 PAL domain in complex with AtBMI1b binding site

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	HNH	e5y53A1	A: a/b three-layered sandwiches	X: HUP domain-like	H: His-Me finger endonucleases	T: His-Me finger endonucleases	F: HNH	ECOD (v294.1)
B	HNH	e5y53B1	A: a/b three-layered sandwiches	X: HUP domain-like	H: His-Me finger endonucleases	T: His-Me finger endonucleases	F: HNH	ECOD (v294.1)
D [auth C]	HNH	e5y53C1	A: a/b three-layered sandwiches	X: HUP domain-like	H: His-Me finger endonucleases	T: His-Me finger endonucleases	F: HNH	ECOD (v294.1)
E	HNH	e5y53E1	A: a/b three-layered sandwiches	X: HUP domain-like	H: His-Me finger endonucleases	T: His-Me finger endonucleases	F: HNH	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, D [auth C], E	PF12165	Alfin (Alfin)	Alfin	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, D [auth C], E	PHD finger protein ALFIN-LIKE 2	protein binding binding histone binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding transcription regulator activity transcription coregulator activity cation binding transition metal ion binding protein binding binding histone binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding transcription regulator activity transcription coregulator activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process cellular process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process cellular component organization chromatin organization cellular component organization or biogenesis	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle
C [auth D], F	AtBMI1b binding site	aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity transferase activity catalytic activity ubiquitin-protein transferase activity cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity transferase activity catalytic activity ubiquitin-protein transferase activity cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding ubiquitin-like protein ligase activity ubiquitin protein ligase activity	response to acid chemical response to stimulus response to stress response to chemical response to oxygen-containing compound response to abiotic stimulus response to water response to water deprivation protein autoubiquitination primary metabolic process protein ubiquitination macromolecule modification metabolic process cellular process response to acid chemical response to stimulus response to stress response to chemical response to oxygen-containing compound response to abiotic stimulus response to water response to water deprivation protein autoubiquitination primary metabolic process protein ubiquitination macromolecule modification metabolic process cellular process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, D [auth C], E	IPR001965	Zinc finger, PHD-type	Domain
A, B, D [auth C], E	IPR045104	Alfin	Family
A, B, D [auth C], E	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
A, B, D [auth C], E	IPR019787	Zinc finger, PHD-finger	Domain
A, B, D [auth C], E	IPR044104	Alfin1-like, PHD finger	Domain
A, B, D [auth C], E	IPR011011	Zinc finger, FYVE/PHD-type	Homologous Superfamily
A, B, D [auth C], E	IPR021998	Alfin, N-terminal	Domain
A, B, D [auth C], E	IPR019786	Zinc finger, PHD-type, conserved site	Conserved Site
C [auth D], F	IPR044807	E3 ubiquitin protein ligase DRIP1-like	Family
C [auth D], F	IPR017907	Zinc finger, RING-type, conserved site	Conserved Site
C [auth D], F	IPR044768	DRIP1/2, RAWUL domain	Domain
C [auth D], F	IPR001841	Zinc finger, RING-type	Domain
C [auth D], F	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

5Y53 | pdb_00005y53

Crystal structure of AL2 PAL domain in complex with AtBMI1b binding site

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage