5Y4C | pdb_00005y4c

Crystal structure of EfeO-like protein Algp7 in complex with a metal ion

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Imelysin domain-like	8052611	3002130	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Imelysin domain-like	8052612	3002130	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Peptidase_M75	e5y4cA1	A: alpha bundles	X: Imelysin peptidase-like (From Topology)	H: Imelysin peptidase-like (From Topology)	T: Imelysin peptidase-like	F: Peptidase_M75	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.1420.20	Mainly Alpha	Up-down Bundle	A middle domain of Talin 1	M75 peptidase, HXXE motif	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF09375	Imelysin (Peptidase_M75)	Imelysin	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Alginate-binding protein	cation binding ion binding binding metal ion binding small molecule binding	-	cellular anatomical structure cell envelope

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR018976	Imelysin-like domain	Domain
A	IPR053377	Iron uptake and transport EfeM/EfeO	Family
A	IPR050894	Iron uptake system component EfeM/EfeO	Family
A	IPR034981	EfeO/Algp7, imelysin-like domain	Domain
A	IPR038352	Imelysin-like domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.