5Y05 | pdb_00005y05

Structural characterization of msmeg_4306 from Mycobacterium smegmatis


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AUNK_F_TYPEe5y05A2 A: alpha bundlesX: YscO-likeH: CT398 helical hairpin (From Topology)T: CT398 helical hairpinF: UNK_F_TYPEECOD (1.6)
AUNK_F_TYPEe5y05A1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: UNK_F_TYPEECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.10.287.1490 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF02591C4-type zinc ribbon domain (Zn_ribbon_9)C4-type zinc ribbon domainZn-ribbon_9 is a Zn-ribbon domain rich in aromatic and positively charged amino acid residues. This C-terminal Zn-ribbon domain consists of two beta-strands acting as a scaffold for the two Zn knuckles. Both pairs of cysteines making up the two Zn kn ...Zn-ribbon_9 is a Zn-ribbon domain rich in aromatic and positively charged amino acid residues. This C-terminal Zn-ribbon domain consists of two beta-strands acting as a scaffold for the two Zn knuckles. Both pairs of cysteines making up the two Zn knuckles are situated at highly conserved sharp beta-turns, an arrangement that facilitates the tetrahedral coordination of the divalent Zn ion. The two Zn-knuckle cysteine motifs are separated by 20 residues, 9 of which form an alpha-helix (helix 4) [2].Structural modelling suggests this domain may bind nucleic acids [1]. The domain appears to bind flaA-mRNA, thus contributing to flagellum formation and motility [2].
Domain
PF24481CT398-like coiled coil hairpin domain (CT398_CC)CT398-like coiled coil hairpin domainThis entry, previously known as DUF7581, represents a coiled coil hairpin domain found N-terminal in CT398 from C. trachomatis, MSMEG_4306 M. smegmatis and related bacterial sequences predominantly from actinobacteria. Both CT398 and MSMEG_4306 prote ...This entry, previously known as DUF7581, represents a coiled coil hairpin domain found N-terminal in CT398 from C. trachomatis, MSMEG_4306 M. smegmatis and related bacterial sequences predominantly from actinobacteria. Both CT398 and MSMEG_4306 proteins have been structurally characterised [1,2]. CT398 protein is involved in several aspects of chlamydial biology and pathogenesis, and is capable of interacting with multiple binding partners. The coiled coil hairpin domain of CT398 engages in interaction with RpoN as well as both T3SS ATPase-regulators FliH and CdsL [2].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
msmeg_4306 - -