5XRW | pdb_00005xrw

Crystal structure of flagellar motor switch complex from H. pylori

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d5xrwd_	All beta proteins	Surface presentation of antigens (SPOA)	Surface presentation of antigens (SPOA)	automated matches	automated matches	(Helicobacter pylori 26695 ) [TaxId: 85962 ],	SCOPe (2.08)
C	d5xrwc_	All beta proteins	Surface presentation of antigens (SPOA)	Surface presentation of antigens (SPOA)	automated matches	automated matches	(Helicobacter pylori 26695 ) [TaxId: 85962 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Surface presentation of antigens (SPOA)	8058627	3001883	SCOP2B (2022-06-29)
A	SCOP2 Family	Surface presentation of antigens (SPOA)-like	8058626	4000884	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Surface presentation of antigens (SPOA)	8058627	3001883	SCOP2 (2022-06-29)
D	SCOP2B Superfamily	Surface presentation of antigens (SPOA)	8058625	3001883	SCOP2B (2022-06-29)
C	SCOP2 Family	Surface presentation of antigens (SPOA)-like	8058624	4000884	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	Surface presentation of antigens (SPOA)	8058625	3001883	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Chlorophyllase2	e5xrwB1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: gp11/gp12 receptor-binding domain	T: gp11/gp12 receptor-binding domain	F: Chlorophyllase2	ECOD (v294.1)
A	NNMT_PNMT_TEMT	e5xrwA1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: ADP-ribosylation	T: ADP-ribosylation	F: NNMT_PNMT_TEMT	ECOD (v294.1)
D	NNMT_PNMT_TEMT	e5xrwD1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: ADP-ribosylation	T: ADP-ribosylation	F: NNMT_PNMT_TEMT	ECOD (v294.1)
C	Chlorophyllase2	e5xrwC1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: gp11/gp12 receptor-binding domain	T: gp11/gp12 receptor-binding domain	F: Chlorophyllase2	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.30.330.10	Mainly Beta	Roll	Surface presentation of antigens (SPOA)	SpoA-like	CATH (4.3.0)
A	2.30.330.10	Mainly Beta	Roll	Surface presentation of antigens (SPOA)	SpoA-like	CATH (4.3.0)
D	2.30.330.10	Mainly Beta	Roll	Surface presentation of antigens (SPOA)	SpoA-like	CATH (4.3.0)
C	2.30.330.10	Mainly Beta	Roll	Surface presentation of antigens (SPOA)	SpoA-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF01052	Type III flagellar switch regulator (C-ring) FliN C-term (FliMN_C)	Type III flagellar switch regulator (C-ring) FliN C-term	This family includes the C-terminal region of flagellar motor switch proteins FliN and FliM. It is associated with family FliM, Pfam:PF02154 and family FliN_N Pfam:PF16973.	Domain
C, D	PF01052	Type III flagellar switch regulator (C-ring) FliN C-term (FliMN_C)	Type III flagellar switch regulator (C-ring) FliN C-term	This family includes the C-terminal region of flagellar motor switch proteins FliN and FliM. It is associated with family FliM, Pfam:PF02154 and family FliN_N Pfam:PF16973.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	FliN	cytoskeletal motor activity phosphoric ester hydrolase activity phosphoprotein phosphatase activity catalytic activity, acting on a protein hydrolase activity, acting on ester bonds phosphatase activity hydrolase activity catalytic activity	chemotaxis response to stimulus taxis response to chemical response to external stimulus locomotion regulation of bacterial-type flagellum-dependent cell motility regulation of biological process regulation of cell motility regulation of cellular process biological regulation archaeal or bacterial-type flagellum-dependent cell motility cilium or flagellum-dependent cell motility regulation of locomotion chemotaxis response to stimulus taxis response to chemical response to external stimulus locomotion regulation of bacterial-type flagellum-dependent cell motility regulation of biological process regulation of cell motility regulation of cellular process biological regulation archaeal or bacterial-type flagellum-dependent cell motility cilium or flagellum-dependent cell motility regulation of locomotion cellular process bacterial-type flagellum-dependent cell motility cell motility	cell periphery cellular anatomical structure plasma membrane membrane bacterial-type flagellum basal body cell projection organelle membraneless organelle bacterial-type flagellum
C, D	FliY	phosphoric ester hydrolase activity phosphoprotein phosphatase activity catalytic activity, acting on a protein hydrolase activity, acting on ester bonds phosphatase activity hydrolase activity catalytic activity cytoskeletal motor activity	chemotaxis response to stimulus taxis response to chemical response to external stimulus locomotion regulation of bacterial-type flagellum-dependent cell motility regulation of biological process regulation of cell motility regulation of cellular process biological regulation archaeal or bacterial-type flagellum-dependent cell motility cilium or flagellum-dependent cell motility regulation of locomotion chemotaxis response to stimulus taxis response to chemical response to external stimulus locomotion regulation of bacterial-type flagellum-dependent cell motility regulation of biological process regulation of cell motility regulation of cellular process biological regulation archaeal or bacterial-type flagellum-dependent cell motility cilium or flagellum-dependent cell motility regulation of locomotion cellular process bacterial-type flagellum-dependent cell motility cell motility	bacterial-type flagellum basal body cell projection cellular anatomical structure organelle membraneless organelle bacterial-type flagellum cell periphery plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR001172	Flagellar motor switch FliN/Type III secretion HrcQb	Family
A, B	IPR001543	Flagellar motor switch protein FliN-like, C-terminal domain	Domain
A, B	IPR012826	Flagellar motor switch FliN	Family
A, B	IPR036429	SpoA-like superfamily	Homologous Superfamily
A, B	IPR051469	Flagellar motor switch protein FliN/MopA/SpaO	Family
C, D	IPR001172	Flagellar motor switch FliN/Type III secretion HrcQb	Family
C, D	IPR012826	Flagellar motor switch FliN	Family
C, D	IPR036429	SpoA-like superfamily	Homologous Superfamily
C, D	IPR001543	Flagellar motor switch protein FliN-like, C-terminal domain	Domain
C, D	IPR028976	CheC-like superfamily	Homologous Superfamily
C, D	IPR051469	Flagellar motor switch protein FliN/MopA/SpaO	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.